Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCAC  >  BK006942/327916‑328490
                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                      
ACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCT                                                                                                                                                                                                                                                                                     <  SRR13385771.1811873/301‑1 (MQ=60)
                                   TTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGA                                                                                                                                                                                                                                                                <  SRR13385771.68019/287‑1 (MQ=60)
                                          ATATCAATGATATTTCTCGAACCTGGAATTCTAATGGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTGCGTTTGGATTATGAGATGTTGTGGACCGCCTCATTG                                                                                                                                                                                                                                            <  SRR13385771.1122409/300‑1 (MQ=60)
                                                     ATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGCTTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGCTACACT                                                                                                                                                                                                                                >  SRR13385771.173996/1‑301 (MQ=60)
                                                                   GAATGCTAATTGAGAAAAAAAAAAGTTAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCA                                                                                                                                                                                                                  <  SRR13385771.1459434/301‑1 (MQ=60)
                                                                                          AGTGAAAAGGAAATGAGAGTATTAATAGTTAGTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAAGA‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTT                                                                                                                                                                                           <  SRR13385771.78523/301‑1 (MQ=60)
                                                                                                         AGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAAGTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTA                                                                                                                                                                            <  SRR13385771.1447221/301‑1 (MQ=60)
                                                                                                                    ATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACA                                                                                                                                                                  <  SRR13385771.732713/300‑1 (MQ=60)
                                                                                                                       TATTAAGTATGGATCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATGAGTTTAAAGCAGAATGCATCCGTATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACTGAACGTTATTCACTCATTATACGCTGCGTTCGTTTGGATTATGAGAAGTTTTTGACCGCCTCATTGATGGTATACACTTCTTTATACCATCAATCACAGAAGACCAAATTTTTTTGATGTAGGTTAGGTATAAGCCCACAAAC                                                                                                                                                               >  SRR13385771.170935/1‑300 (MQ=60)
                                                                                                                          TAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATG                                                                                                                                                            <  SRR13385771.1209829/300‑1 (MQ=60)
                                                                                                                           AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                                                                                                                          <  SRR13385771.1074199/301‑1 (MQ=60)
                                                                                                                           AAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGC                                                                                                                                                          <  SRR13385771.1194830/301‑1 (MQ=60)
                                                                                                                                      ATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCC                                                                                                                                                                     <  SRR13385771.97175/279‑1 (MQ=60)
                                                                                                                                             ATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAAC                                                                                                                                        <  SRR13385771.515384/301‑1 (MQ=60)
                                                                                                                                                                                  TTGGGAA‑TAAAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGACGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCACACAAACATGGCGGCAATTTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTATCCATCTGTG                                                                                                    >  SRR13385771.122615/1‑300 (MQ=60)
                                                                                                                                                                                                   CAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTT                                                                                   >  SRR13385771.1038207/1‑301 (MQ=60)
                                                                                                                                                                                                    AATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTC                                                                                  <  SRR13385771.403718/301‑1 (MQ=60)
                                                                                                                                                                                                        AGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCATCATTGATGGGATACACCTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGAAATGTTAAAGCACACGAAAACACATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTG                                                                               >  SRR13385771.108621/1‑300 (MQ=60)
                                                                                                                                                                                                                                        AAGAACTGTTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCC                                                                                                                                                                      >  SRR13385771.278512/1‑181 (MQ=60)
                                                                                                                                                                                                                                                TTGAATAGCATTAGGTAATTTTGAATGTTTTCTAACGGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATCTTTTGGACTGCCTCATTGCTGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAACCCACAAACATGGCGGCAATGTTACAGCAAACGCAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCACGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGC                                      >  SRR13385771.433563/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                    GGAACGTTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGCGTATGTGCTATTGATTTGCAGTTTCCCAC  >  SRR13385771.1064689/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                      
ACGAAGGTCGTCTAATCACGTTTACTGAAAAGGAATTACGATATATCAATGATATTTCTCGAACCTGGAATGCTAATTGAGAAAAAAAAAAGTGAAAAGGAAATGAGAGTATTAATATTTATTAAGTATGGAGCATATATAATCCGAAAAATGATTATAGATTAATTTAGAATATGATTTGGGAA‑T‑AAATTAACAATTAGTTTAAAGCAGAAGGCAGCCGGATGAGGAACAAGAACTGTTGAATAGTATTAGGTAATTTTGAATGTTTTCTAACGGAACGCTATTCACTGATTATACGCTTTGTTCGTTTGGATTATGAGATGTTTTGGACCGCCTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCAC  >  BK006942/327916‑328490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑