Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTACAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCTCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACAC  >  BK006942/328250‑328841
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                           
CTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAACCCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGC                                                                                                                                                                                                                                                                                                     >  SRR13385772.1025340/1‑301 (MQ=60)
                             ATCAATCACAGAAGGCCAAATTTTTTTGATGTAGCTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTCGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTT                                                                                                                                                                                                                                                                        >  SRR13385772.975122/1‑301 (MQ=60)
                                          GGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCAT                                                                                                                                                                                                                                                           >  SRR13385772.1301764/1‑301 (MQ=60)
                                                  TTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGT                                                                                                                                                                                                                                                   >  SRR13385772.706880/1‑301 (MQ=60)
                                                   TTTTTGATGTAGGTTAGGTAGAAGCCTACAAACATGGCGTCAATGTTAAAGCAAACGAAAATCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCGTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGCCGGTCTATGTGTTATTGATGTGCAGTTTCTCACCAAATTCATCAATAAAGGCTTTCATAAACTGATCGCAGTATTGACTCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTacctgtaatggcttagtt                                                                                                                                                                                                                                                  >  SRR13385772.86809/1‑283 (MQ=60)
                                                                           CCCACAAACATGGCAGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAAT                                                                                                                                                                                                                          <  SRR13385772.1003057/301‑1 (MQ=60)
                                                                                                                CCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAA                                                                                                                                                                                      >  SRR13385772.310136/1‑300 (MQ=60)
                                                                                                                  CATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATC                                                                                                                                                                                   >  SRR13385772.476139/1‑301 (MQ=60)
                                                                                                                        AAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGA                                                                                                                                                                             <  SRR13385772.100538/301‑1 (MQ=60)
                                                                                                                                                  ATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCA                                                                                                                                                   <  SRR13385772.9418/301‑1 (MQ=60)
                                                                                                                                                     ACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATCAAGGGTCTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCCTTTCACTTGTCGAGCAGTTTACTTCCCTGTCCTGGAGAcgtaaaatgctagaccagtgcaatggtaccaagccaacatatcctgggtaacacctgcggtcagtttttgcaaacattacataggcagggcaacagtctga                                                                                                                                                 >  SRR13385772.1056445/1‑199 (MQ=60)
                                                                                                                                                     ACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGG                                                                                                                                                                                                                <  SRR13385772.913981/237‑1 (MQ=60)
                                                                                                                                                           ATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCAGCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCAGTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAA                                                                                                                                          <  SRR13385772.1215647/301‑1 (MQ=60)
                                                                                                                                                                            AGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTGACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAG                                                                                                                         <  SRR13385772.1218036/301‑1 (MQ=60)
                                                                                                                                                                               CAGCCCCAACAGTGTACATGCAGTAGTCGCATACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTTGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGGCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAA                                                                                                                      <  SRR13385772.1278961/301‑1 (MQ=60)
                                                                                                                                                                                    CCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAA                                                                                                                 <  SRR13385772.173158/301‑1 (MQ=60)
                                                                                                                                                                                             TACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAACGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAATGAC                                                                                                          >  SRR13385772.525111/1‑299 (MQ=60)
                                                                                                                                                                                                                    GTAGGTGTTATTGATGTGCAGTTTCCCACCAAAGTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGTTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTGACGAAAGTTTCGATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAATTCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGC                                                                                  <  SRR13385772.412113/300‑1 (MQ=60)
                                                                                                                                                                                                                                GATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAG                                                                      <  SRR13385772.1015490/300‑1 (MQ=60)
                                                                                                                                                                                                                                   GTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACA                                                                                                                                                                                                  >  SRR13385772.1261437/1‑173 (MQ=60)
                                                                                                                                                                                                                                              CACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTGGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGTCAGTTTGTAAATCGGGGGCAGAATAGAGAAGCCACAACCCAAATGA                                                       <  SRR13385772.961031/301‑1 (MQ=60)
                                                                                                                                                                                                                                                         acaagaaaggttttcataacagGACCGCAGGTGTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATTAAATACGTTTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAATCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACA                                            <  SRR13385772.1256976/279‑1 (MQ=60)
                                                                                                                                                                                                                                                                  GGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACGTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTGTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCGTGGGAATAACGAGTAGGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATA                                   <  SRR13385772.382069/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                      TCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTAGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAA                                <  SRR13385772.478916/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                        ATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATAT                             <  SRR13385772.316411/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                               GACCGCAGGTTTGACCCAGTATAGGTTGTCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCA                       <  SRR13385772.84122/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                  TATAGGTTGGCGTGGTACCAGTTCACTTGTCGAGCAGTTTACTGCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAAGCGTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTAC    <  SRR13385772.928396/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                   ATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACGTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACAC  <  SRR13385772.1112944/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                           
CTCATTGATGGGATACACTTCTTTATACCATCAATCACAGAAGGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTACAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCTCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACAC  >  BK006942/328250‑328841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑