Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTACAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCTCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACACGGGCAGAGGTTTCGAAAC  >  BK006942/328292‑328859
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                  
GGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCAT                                                                                                                                                                                                                                                                             >  SRR13385772.1301764/1‑301 (MQ=60)
        TTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGT                                                                                                                                                                                                                                                                     >  SRR13385772.706880/1‑301 (MQ=60)
                                 CCCACAAACATGGCAGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAAT                                                                                                                                                                                                                                            <  SRR13385772.1003057/301‑1 (MQ=60)
                                                                      CCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAA                                                                                                                                                                                                        >  SRR13385772.310136/1‑300 (MQ=60)
                                                                        CATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATC                                                                                                                                                                                                     >  SRR13385772.476139/1‑301 (MQ=60)
                                                                              AAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGA                                                                                                                                                                                               <  SRR13385772.100538/301‑1 (MQ=60)
                                                                                                        ATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCA                                                                                                                                                                     <  SRR13385772.9418/301‑1 (MQ=60)
                                                                                                           ACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATCAAGGGTCTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCCTTTCACTTGTCGAGCAGTTTACTTCCCTGTCCTGGAGAcgtaaaatgctagaccagtgcaatggtaccaagccaacatatcctgggtaacacctgcggtcagtttttgcaaacattacataggcagggcaacagtctga                                                                                                                                                                   >  SRR13385772.1056445/1‑199 (MQ=60)
                                                                                                           ACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGG                                                                                                                                                                                                                                  <  SRR13385772.913981/237‑1 (MQ=60)
                                                                                                                 ATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCAGCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCAGTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAA                                                                                                                                                            <  SRR13385772.1215647/301‑1 (MQ=60)
                                                                                                                                  AGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTGACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAG                                                                                                                                           <  SRR13385772.1218036/301‑1 (MQ=60)
                                                                                                                                     CAGCCCCAACAGTGTACATGCAGTAGTCGCATACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTTGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGGCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAA                                                                                                                                        <  SRR13385772.1278961/301‑1 (MQ=60)
                                                                                                                                          CCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAA                                                                                                                                   <  SRR13385772.173158/301‑1 (MQ=60)
                                                                                                                                                   TACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAACGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAATGAC                                                                                                                            >  SRR13385772.525111/1‑299 (MQ=60)
                                                                                                                                                                          GTAGGTGTTATTGATGTGCAGTTTCCCACCAAAGTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGTTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTGACGAAAGTTTCGATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAATTCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGC                                                                                                    <  SRR13385772.412113/300‑1 (MQ=60)
                                                                                                                                                                                      GATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAG                                                                                        <  SRR13385772.1015490/300‑1 (MQ=60)
                                                                                                                                                                                         GTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACA                                                                                                                                                                                                                    >  SRR13385772.1261437/1‑173 (MQ=60)
                                                                                                                                                                                                    CACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTGGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGTCAGTTTGTAAATCGGGGGCAGAATAGAGAAGCCACAACCCAAATGA                                                                         <  SRR13385772.961031/301‑1 (MQ=60)
                                                                                                                                                                                                               acaagaaaggttttcataacagGACCGCAGGTGTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATTAAATACGTTTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAATCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACA                                                              <  SRR13385772.1256976/279‑1 (MQ=60)
                                                                                                                                                                                                                        GGTTTCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACGTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTGTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCGTGGGAATAACGAGTAGGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATA                                                     <  SRR13385772.382069/301‑1 (MQ=60)
                                                                                                                                                                                                                            TCATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTAGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAA                                                  <  SRR13385772.478916/300‑1 (MQ=60)
                                                                                                                                                                                                                              ATAAACTGACCGCAGGTTTGACCCATTATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATAT                                               <  SRR13385772.316411/301‑1 (MQ=60)
                                                                                                                                                                                                                                     GACCGCAGGTTTGACCCAGTATAGGTTGTCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCA                                         <  SRR13385772.84122/300‑1 (MQ=60)
                                                                                                                                                                                                                                                        TATAGGTTGGCGTGGTACCAGTTCACTTGTCGAGCAGTTTACTGCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAAGCGTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTAC                      <  SRR13385772.928396/300‑1 (MQ=60)
                                                                                                                                                                                                                                                         ATAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACGTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACAC                    <  SRR13385772.1112944/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            GGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACACGGG                 <  SRR13385772.1379/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                   TTGGTACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAGAATATAATTCAAGTAAAAGACACCAGCTACACGGGCAGAGGT          >  SRR13385772.274472/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                       TACCATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGTCAGTTTGTAAAGCGGGGGCAGAATAGAGAAGCCACAACCCAAATGA                                                                         <  SRR13385772.970047/234‑1 (MQ=60)
                                                                                                                                                                                                                                                                           ATTTCACTTGTCGAGCAGTTTACTTCCCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACACGGGCAGAGGTTTCGAAAC  >  SRR13385772.671761/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                  
GGCCAAATTTTTTTGATGTAGGTTAGGTAGAAGCCCACAAACATGGCGGCAATGTTAAAGCAAACGAAAACCCATTCAAAACCAAAATTTCTCCATCTGTGATGATAACTCATATTTTCTTGAGCAAGGAAGTCATCCCCAACAGTGTACATGCAGTAGGCGCAGACGGTGTATGTGTTATTGATGTGCAGTTTCCCACCAAATTCATCAATAAAGGGTTTCATAAACTGACCGCAGGTTTGACCCATTACAGGTTGGCTTGGTACCATTTCACTTGTCGAGCAGTTTACTTCTCTGTCATGGAGAAGTAAGCTTACGAAAGTTTCAATGAAATACGTGTATGGTGAAACCCTGTACATGAATGTCCAAAATCTTGGGAATAACGAGTATGGTTGCATAACGCCACAGAATGAAGCTGTGAAACTATAGAGGAAGGCAACAAAGACAGCGGCAGTTTGTAAATCGGGGGCAGAATATAGAAGCCACAACCCAAATGACAAATAATACATGGAAAATAAAATATAATTCAAGTAAAAGACACCAGCTACACGGGCAGAGGTTTCGAAAC  >  BK006942/328292‑328859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑