Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAATGATAAGTATTAGATCTCGCTTCCCTGGCGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATACGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGC  >  BK006942/328951‑329529
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                     
CCAATGATAAGTATTAGATCTCGCTTCCCTGGCGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCA                                                                                                                                                                                                                                                                                         <  SRR13385772.980816/300‑1 (MQ=60)
    TGATAAGTATTAGATCTCGCTTCCCTGGTGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGG                                                                                                                                                                                                                                                                                    >  SRR13385772.1202448/1‑301 (MQ=60)
                          CCATGGCGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGA                                                                                                                                                                                                                                                              <  SRR13385772.823316/301‑1 (MQ=60)
                              GGCGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATT                                                                                                                                                                                                                                                            <  SRR13385772.230005/299‑1 (MQ=60)
                              GGCGATAGATACTTCTTTAGATGGCAAAGCTGTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAAGAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGGCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATT                                                                                                                                                                                                                                                            <  SRR13385772.40511/299‑1 (MQ=60)
                                      ATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACGCCAGATTTCCGGGCTT                                                                                                                                                                                                                                                   <  SRR13385772.467267/300‑1 (MQ=60)
                                                            CTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATC                                                                                                                                                                                                                             >  SRR13385772.885169/1‑300 (MQ=60)
                                                               ATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATC                                                                                                                                                                                                                          >  SRR13385772.1227306/1‑300 (MQ=60)
                                                                         TGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTGGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGTCTTCTTCGTCTAATAAAAGCAAATCATCAGCAACCCGC                                                                                                                                                                                                                >  SRR13385772.322002/1‑300 (MQ=60)
                                                                                             AACACAAAGCATCAGGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTTTGGAGAGGATTGC                                                                                                                                                                                           >  SRR13385772.287661/1‑301 (MQ=60)
                                                                                                ACAAAGCAGCATTAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATTTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACTGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAG                                                                                                                                                                                        <  SRR13385772.711017/301‑1 (MQ=60)
                                                                                                    AGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTT‑CATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTC                                                                                                                                                                                   <  SRR13385772.1033703/301‑1 (MQ=60)
                                                                                                                                      GACCGTTGATATTATGCGTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTA                                                                                                                                                  <  SRR13385772.32590/301‑1 (MQ=60)
                                                                                                                                                ATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGC                                                                                                                                        >  SRR13385772.1177960/1‑301 (MQ=60)
                                                                                                                                                        TTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAA                                                                                                                                 <  SRR13385772.442436/300‑1 (MQ=60)
                                                                                                                                                          GTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATT                                                                                                                               <  SRR13385772.1196616/300‑1 (MQ=60)
                                                                                                                                                                                          CGCGCCAGCATTCAAAGCATATTTAGCAAAAACATAGGTCATGTCTCTCGTGGTACAAATGTACTGTCTCTTTGTGATAAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAAGCATCAGCAACCCGCACTTTTGCTGGAGAGGATTGCCAGAGTGCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATT                                                                                              <  SRR13385772.275503/301‑1 (MQ=60)
                                                                                                                                                                                                   ATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTT                                                                                     >  SRR13385772.1131303/1‑301 (MQ=60)
                                                                                                                                                                                                         AGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACGTTATTTGTTCCATATATGAAGGCGGACGCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCGTCTAATAAAAGCAAATCATCAGCGACCCGCACTTTTTCTGGGGAGGATTGCCAGAGTTCTGCCCATTGAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGGGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTT                                                                               <  SRR13385772.473882/301‑1 (MQ=60)
                                                                                                                                                                                                                   GCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAAT                                                                                                                                <  SRR13385772.1288352/242‑1 (MQ=60)
                                                                                                                                                                                                                            TAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTT‑CATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAA                                                            >  SRR13385772.298723/1‑300 (MQ=60)
                                                                                                                                                                                                                             AGGTCATGTCTCTCGTGGTACAAATGTACTGTCTCGTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTATGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAA                                                            <  SRR13385772.305814/300‑1 (MQ=60)
                                                                                                                                                                                                                                    GTCTATCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAA                                                     <  SRR13385772.952009/300‑1 (MQ=60)
                                                                                                                                                                                                                                        CTCTTGTGACAAATGTACTGTCTCTTTGTGATTAACTTTATGTGTTCCATATAGGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAAT                                                   <  SRR13385772.119223/298‑1 (MQ=60)
                                                                                                                                                                                                                                                ACAAATTTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCTACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATT                                         <  SRR13385772.1197075/300‑1 (MQ=60)
                                                                                                                                                                                                                                                 CAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTAT                                       >  SRR13385772.88292/1‑301 (MQ=60)
                                                                                                                                                                                                                                                 CAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTA                                                                                  <  SRR13385772.1220981/258‑1 (MQ=60)
                                                                                                                                                                                                                                                                                   GTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGT      <  SRR13385772.1103301/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                      CCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGC  >  SRR13385772.635948/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                     
CCAATGATAAGTATTAGATCTCGCTTCCCTGGCGATATATACTTCTTTAGATTGCAAAGCCTTATCTTGAACCTGATTGATCAAAGGGGAGGAAACACAAAGCATCATGAAGCACAAGAAAATAGCATCTTGCAGACCGTTGATATTATGCTTTGTCCTCCAAAATGAAAATCCAATGAATAGTCCAGCGCCAGCATTCAAAGCATATTTAGCGAAAACATAGGTCATGTCTCTCTTGGTACAAATGTACTGTCTCTTTGTGATTAACTTTATTTGTTCCATATACGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGC  >  BK006942/328951‑329529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑