Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTCCATATACGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATC  >  BK006942/329226‑329817
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                      
GTTCCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGT                                                                                                                                                                                                                                                                                                      <  SRR13385772.1103301/300‑1 (MQ=60)
   CCATATATGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGC                                                                                                                                                                                                                                                                                                  >  SRR13385772.635948/1‑301 (MQ=60)
                                  AGTGAAATCAACACCAGATGTCCGGGCTTCTTAGTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTGAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAA                                                                                                                                                                                                                                                                   <  SRR13385772.980537/301‑1 (MQ=60)
                                                                        ATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATA                                                                                                                                                                                                                             <  SRR13385772.578474/301‑1 (MQ=60)
                                                                          AAAAGCAAATCATCAGCAACCAGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAA                                                                                                                                                                                                                           <  SRR13385772.850692/301‑1 (MQ=60)
                                                                            AAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTTATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATG                                                                                                                                                                                                                         >  SRR13385772.43869/1‑301 (MQ=60)
                                                                                             CCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGAT                                                                                                                                                                                                        <  SRR13385772.651411/301‑1 (MQ=60)
                                                                                                        TCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGC                                                                                                                                                                                             >  SRR13385772.400832/1‑301 (MQ=60)
                                                                                                                                       TAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCT                                                                                                                                                                                                                                                                                                 >  SRR13385772.662712/1‑170 (MQ=60)
                                                                                                                                                          AGGGTAAGATACTGTCTTGTCAATTGTGCTGGAGGTTGTCTTCTCTGCATCATCCAGTGTAATATTTGTACTTCCGCTACCAACAACGTCAATAACGGAATCAGCCGGATTATCCAGTTCTCTGTCAAATGTTAGTCGTCTATTGTGAGCGACAAAATAGTCACAGGCAGTAGGTAATGAACCAAAATAGACACATTCACCTCCTCTTTTTAGTAAATAAAGGTTAGCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCTAAATCTTT                                                                                                                                           <  SRR13385772.1240282/301‑1 (MQ=60)
                                                                                                                                                            GGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTT                                                                                                                                         <  SRR13385772.1110341/301‑1 (MQ=60)
                                                                                                                                                             GTAAGATACTGTCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAAGAACGAAATCAGCCGGATTATCCATTTCGCTGTCAAATGTTAGGCGTCTAGTGTGAGCTACAAAATAGTCACATGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAATGAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCGAAAGCTTTTTC                                                                                                                                        <  SRR13385772.416427/301‑1 (MQ=60)
                                                                                                                                                                    ACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATT                                                                                                                                 <  SRR13385772.100492/301‑1 (MQ=60)
                                                                                                                                                                           CATCAATTTTGCTTGATGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATGATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAAGAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGAT                                                                                                                          <  SRR13385772.897653/301‑1 (MQ=60)
                                                                                                                                                                                                                                          CAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTT                                                                                                                                                                                               <  SRR13385772.506896/169‑1 (MQ=60)
                                                                                                                                                                                                                                                        ACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGACGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAAACGAGAAGGCTTCGTGACCAATT                                             >  SRR13385772.662230/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                  CGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAAT   <  SRR13385772.30736/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                    TCTATTGTGAGCTACAACATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATCGATAATAATTGTCTTTGAGTTGGAGATAAATC  >  SRR13385772.463991/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                                        TTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAG                                                                                                                                                                  >  SRR13385772.593253/1‑136 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                      
GTTCCATATACGAAGGCGGACTCCATACGGACGTAGTGAAATCAACACCAGATTTCCGGGCTTCTTCTTCTAATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATC  >  BK006942/329226‑329817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑