Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTC  >  BK006942/329298‑329864
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                 
ATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATA                                                                                                                                                                                                                                                                            <  SRR13385772.578474/301‑1 (MQ=60)
  AAAAGCAAATCATCAGCAACCAGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAA                                                                                                                                                                                                                                                                          <  SRR13385772.850692/301‑1 (MQ=60)
    AAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTTATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATG                                                                                                                                                                                                                                                                        >  SRR13385772.43869/1‑301 (MQ=60)
                     CCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGAT                                                                                                                                                                                                                                                       <  SRR13385772.651411/301‑1 (MQ=60)
                                TCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGC                                                                                                                                                                                                                                            >  SRR13385772.400832/1‑301 (MQ=60)
                                                                                  AGGGTAAGATACTGTCTTGTCAATTGTGCTGGAGGTTGTCTTCTCTGCATCATCCAGTGTAATATTTGTACTTCCGCTACCAACAACGTCAATAACGGAATCAGCCGGATTATCCAGTTCTCTGTCAAATGTTAGTCGTCTATTGTGAGCGACAAAATAGTCACAGGCAGTAGGTAATGAACCAAAATAGACACATTCACCTCCTCTTTTTAGTAAATAAAGGTTAGCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCTAAATCTTT                                                                                                                                                                                          <  SRR13385772.1240282/301‑1 (MQ=60)
                                                                                    GGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTT                                                                                                                                                                                        <  SRR13385772.1110341/301‑1 (MQ=60)
                                                                                     GTAAGATACTGTCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAAGAACGAAATCAGCCGGATTATCCATTTCGCTGTCAAATGTTAGGCGTCTAGTGTGAGCTACAAAATAGTCACATGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAATGAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCGAAAGCTTTTTC                                                                                                                                                                                       <  SRR13385772.416427/301‑1 (MQ=60)
                                                                                            ACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATT                                                                                                                                                                                <  SRR13385772.100492/301‑1 (MQ=60)
                                                                                                   CATCAATTTTGCTTGATGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATGATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAAGAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGAT                                                                                                                                                                         <  SRR13385772.897653/301‑1 (MQ=60)
                                                                                                                                                                  CAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTT                                                                                                                                                                                                                                              <  SRR13385772.506896/169‑1 (MQ=60)
                                                                                                                                                                                ACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGACGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAAACGAGAAGGCTTCGTGACCAATT                                                                                            >  SRR13385772.662230/1‑301 (MQ=60)
                                                                                                                                                                                                                          CGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAAT                                                  <  SRR13385772.30736/301‑1 (MQ=60)
                                                                                                                                                                                                                            TCTATTGTGAGCTACAACATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATCGATAATAATTGTCTTTGAGTTGGAGATAAATC                                                 >  SRR13385772.463991/1‑300 (MQ=60)
                                                                                                                                                                                                                                TTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAG                                                                                                                                                                                                                 >  SRR13385772.593253/1‑136 (MQ=60)
                                                                                                                                                                                                                                                      AGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTGTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCT                      <  SRR13385772.568899/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                          AAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTC  >  SRR13385772.163281/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                 
ATAAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTC  >  BK006942/329298‑329864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑