Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCT  >  BK006942/329300‑329892
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     
AAAAGCAAATCATCAGCAACCAGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAA                                                                                                                                                                                                                                                                                                      <  SRR13385772.850692/301‑1 (MQ=60)
  AAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTTATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATG                                                                                                                                                                                                                                                                                                    >  SRR13385772.43869/1‑301 (MQ=60)
                   CCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGAT                                                                                                                                                                                                                                                                                   <  SRR13385772.651411/301‑1 (MQ=60)
                              TCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGC                                                                                                                                                                                                                                                                        >  SRR13385772.400832/1‑301 (MQ=60)
                                                                                AGGGTAAGATACTGTCTTGTCAATTGTGCTGGAGGTTGTCTTCTCTGCATCATCCAGTGTAATATTTGTACTTCCGCTACCAACAACGTCAATAACGGAATCAGCCGGATTATCCAGTTCTCTGTCAAATGTTAGTCGTCTATTGTGAGCGACAAAATAGTCACAGGCAGTAGGTAATGAACCAAAATAGACACATTCACCTCCTCTTTTTAGTAAATAAAGGTTAGCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCTAAATCTTT                                                                                                                                                                                                                      <  SRR13385772.1240282/301‑1 (MQ=60)
                                                                                  GGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTT                                                                                                                                                                                                                    <  SRR13385772.1110341/301‑1 (MQ=60)
                                                                                   GTAAGATACTGTCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAAGAACGAAATCAGCCGGATTATCCATTTCGCTGTCAAATGTTAGGCGTCTAGTGTGAGCTACAAAATAGTCACATGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAATGAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCGAAAGCTTTTTC                                                                                                                                                                                                                   <  SRR13385772.416427/301‑1 (MQ=60)
                                                                                          ACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATT                                                                                                                                                                                                            <  SRR13385772.100492/301‑1 (MQ=60)
                                                                                                 CATCAATTTTGCTTGATGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATGATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAAGAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGAT                                                                                                                                                                                                     <  SRR13385772.897653/301‑1 (MQ=60)
                                                                                                                                                                CAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTT                                                                                                                                                                                                                                                                          <  SRR13385772.506896/169‑1 (MQ=60)
                                                                                                                                                                              ACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGACGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAAACGAGAAGGCTTCGTGACCAATT                                                                                                                        >  SRR13385772.662230/1‑301 (MQ=60)
                                                                                                                                                                                                                        CGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAAT                                                                              <  SRR13385772.30736/301‑1 (MQ=60)
                                                                                                                                                                                                                          TCTATTGTGAGCTACAACATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATCGATAATAATTGTCTTTGAGTTGGAGATAAATC                                                                             >  SRR13385772.463991/1‑300 (MQ=60)
                                                                                                                                                                                                                              TTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAG                                                                                                                                                                                                                                             >  SRR13385772.593253/1‑136 (MQ=60)
                                                                                                                                                                                                                                                    AGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTGTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCT                                                  <  SRR13385772.568899/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                        AAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTC                              >  SRR13385772.163281/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                TTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCA       <  SRR13385772.134839/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                 TTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACC     >  SRR13385772.604633/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                    GTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCT  <  SRR13385772.539914/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                     
AAAAGCAAATCATCAGCAACCCGCACTTTTTCTGGAGAGGATTGCCAGAGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCT  >  BK006942/329300‑329892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑