Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAGAGCTCTAAATGAAC  >  BK006942/329380‑329946
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           
AGGGTAAGATACTGTCTTGTCAATTGTGCTGGAGGTTGTCTTCTCTGCATCATCCAGTGTAATATTTGTACTTCCGCTACCAACAACGTCAATAACGGAATCAGCCGGATTATCCAGTTCTCTGTCAAATGTTAGTCGTCTATTGTGAGCGACAAAATAGTCACAGGCAGTAGGTAATGAACCAAAATAGACACATTCACCTCCTCTTTTTAGTAAATAAAGGTTAGCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCTAAATCTTT                                                                                                                                                                                                                                                                            <  SRR13385772.1240282/301‑1 (MQ=60)
  GGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTT                                                                                                                                                                                                                                                                          <  SRR13385772.1110341/301‑1 (MQ=60)
   GTAAGATACTGTCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAAGAACGAAATCAGCCGGATTATCCATTTCGCTGTCAAATGTTAGGCGTCTAGTGTGAGCTACAAAATAGTCACATGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAATGAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCAGAAGATAGCCTGACCTTGCATCGAAAGCTTTTTC                                                                                                                                                                                                                                                                         <  SRR13385772.416427/301‑1 (MQ=60)
          ACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATT                                                                                                                                                                                                                                                                  <  SRR13385772.100492/301‑1 (MQ=60)
                 CATCAATTTTGCTTGATGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATGATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAAGAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGAT                                                                                                                                                                                                                                                           <  SRR13385772.897653/301‑1 (MQ=60)
                                                                                              ACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGACGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAAACGAGAAGGCTTCGTGACCAATT                                                                                                                                                                              >  SRR13385772.662230/1‑301 (MQ=60)
                                                                                                                                        CGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAAT                                                                                                                                    <  SRR13385772.30736/301‑1 (MQ=60)
                                                                                                                                          TCTATTGTGAGCTACAACATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATCGATAATAATTGTCTTTGAGTTGGAGATAAATC                                                                                                                                   >  SRR13385772.463991/1‑300 (MQ=60)
                                                                                                                                              TTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAG                                                                                                                                                                                                                                                                                                   >  SRR13385772.593253/1‑136 (MQ=60)
                                                                                                                                                                    AGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTGTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCT                                                                                                        <  SRR13385772.568899/301‑1 (MQ=60)
                                                                                                                                                                                        AAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTC                                                                                    >  SRR13385772.163281/1‑301 (MQ=60)
                                                                                                                                                                                                                TTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCA                                                             <  SRR13385772.134839/300‑1 (MQ=60)
                                                                                                                                                                                                                 TTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACC                                                           >  SRR13385772.604633/1‑301 (MQ=60)
                                                                                                                                                                                                                    GTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCT                                                        <  SRR13385772.539914/301‑1 (MQ=60)
                                                                                                                                                                                                                                           GTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATGACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAG                                 <  SRR13385772.693394/301‑1 (MQ=60)
                                                                                                                                                                                                                                               TGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTC                             >  SRR13385772.1133943/1‑301 (MQ=60)
                                                                                                                                                                                                                                                   ACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCACCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTC                         >  SRR13385772.753118/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                 GATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAACGCTGCTTCGGCGTCTAGACCTGAAGTAGGTTCCTCTAGGAATCACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTATTTGAGTTGGCGATAAATCAGCAACCAGTTTTTCCGAAGGCAATATTAATAGGTTGCTCACAACTCCTAACTAGTCTCTATCCCCATCACCTCTTAGGACGCAG                                              >  SRR13385772.930654/1‑266 (MQ=60)
                                                                                                                                                                                                                                                                 GATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAGAGCT            <  SRR13385772.901772/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                          TGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATACTAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAACGACTCTCTCACAGTTAAGAGCTCTAAATGAAC  >  SRR13385772.899878/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                           
ATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAGAGCTCTAAATGAAC  >  BK006942/329380‑329946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑