Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAGAGCTC  >  BK006942/329348‑329937
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                  
AGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTGGCTAGGCTGATGAATAGTGC                                                                                                                                                                                                                                                                                                   >  SRR13385771.422769/1‑301 (MQ=60)
             TAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGATTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATACATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTG                                                                                                                                                                                                                                                                                      >  SRR13385771.1784697/1‑301 (MQ=60)
                    ATCAGATTGCTTATGGTAAGATCCTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAACTCAGCCGGATTATCCATTTCTCTGTAAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCCCAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCACAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGC                                                                                                                                                                                                                                                                               >  SRR13385771.1404981/1‑301 (MQ=60)
                              TTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGC                                                                                                                                                                                                                                                                      <  SRR13385771.186703/300‑1 (MQ=60)
                                       GATACTGGCTCATCAATGTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTGGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTAGCCATTTCTCTGGCAAATGTGAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCAGTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTGTTAGTAAATAAATTTTATCAAAAGAGCTGATGACACGTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAA                                                                                                                                                                                                                                                            <  SRR13385771.1460944/301‑1 (MQ=60)
                                                           GCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCT                                                                                                                                                                                                                                        >  SRR13385771.1710399/1‑301 (MQ=60)
                                                                              GCATCATCCATTGGAATATTTGTACTTCAGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCC                                                                                                                                                                                                                       <  SRR13385771.1653259/299‑1 (MQ=60)
                                                                                              TATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTCAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCT                                                                                                                                                                                                       >  SRR13385771.1133742/1‑299 (MQ=60)
                                                                                                 TTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGA                                                                                                                                                                                                   <  SRR13385771.1660941/300‑1 (MQ=60)
                                                                                                                CAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGACGTCTAGCACTGAAGTAGGTTCATCTAGGAATAACAACAGAGA                                                                                                                                                                                      >  SRR13385771.1048499/1‑298 (MQ=60)
                                                                                                                    AACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTT                                                                                                                                                                                >  SRR13385771.740839/1‑300 (MQ=60)
                                                                                                                               CGAAATCAGCCGGATTATCCATTTCGCTGTCAAATGTTAGGCGTCTATTGTGATCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACATAGAAGGCTTAGTGACCAATTC                                                                                                                                                                    <  SRR13385771.490541/301‑1 (MQ=60)
                                                                                                                                        CCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAAT                                                                                                                                                           <  SRR13385771.39758/301‑1 (MQ=60)
                                                                                                                                                          TGTCAAATGTTAGGCGTCTATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTG                                                                                                                                         >  SRR13385771.1197503/1‑301 (MQ=60)
                                                                                                                                                                             ATTGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAG                                                                                                                        <  SRR13385771.159749/299‑1 (MQ=60)
                                                                                                                                                                                                                ATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCT                                                                                   >  SRR13385771.421006/1‑301 (MQ=60)
                                                                                                                                                                                                                ATGAACCAAAATAGACACATTCACCACCTCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCGTAATAGGTTGCT                                                                                   >  SRR13385771.907839/1‑301 (MQ=60)
                                                                                                                                                                                                                             GACACATTCACCACCTCTTGTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAA                                                                      <  SRR13385771.1539198/301‑1 (MQ=60)
                                                                                                                                                                                                                                            TCTTTTTAGTAAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCC                                                        >  SRR13385771.1508258/1‑300 (MQ=60)
                                                                                                                                                                                                                                                      AAATAAATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTT                                              >  SRR13385771.1329074/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                    AAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATT                               >  SRR13385771.761809/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                         AGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCA                           >  SRR13385771.791877/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                         AGCTGATGACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTGTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCA                           <  SRR13385771.1658243/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                GACACTTTTGCTAGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCT                   <  SRR13385771.1133073/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                            GGGCTGATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCGGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAG       <  SRR13385771.1899644/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                TGATGACTAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGATGCTTCGGCGTCTAGCCCTGAAGTCGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTACGACGGCAATCTTAATAGGTTGCTAACAACTACTAAATAGTCTCTATCCCCATAAACTCTTAGGACGCAGGCAATTTACACAGACTCTATCACATTTAAGAGCT   >  SRR13385771.232827/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                 GATGAATAGTGCATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACCCTCTCACAGTTAAGAGCTC  >  SRR13385771.1756024/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                                  
AGTTCTGCCCAGTTAATTGAATCAGATTGCTTATGGTAAGATACTGGCTCATCAATTTTGCTTGAGGTTGGCTTCTCTGCATCATCCATTGGAATATTTGTACTTCCGCTACCAACAACGTCAATAACGAAATCAGCCGGATTATCCATTTCTCTGTCAAATGTTAGGCGTCTATCGTGAGCTACAAAATAGTCACAGGCATTAGGTAATGAACCAAAATAGACACACTCACCACCTCTTTTTAGTAAATAGATGTTATCAAAATAGCTGATGACACTTTTGCTAGGCTGATGAATAGTACATAAGATAGCCTGACCTTGCATCGAAAGCTTTTTCAGAAATTGCACGATGGTTAAAGCTGCTTCGGCGTCTAGCCCTGAAGTAGGTTCATCTAGGAATAACAACAGAGAAGGCTTAGTGACCAATTCAACACCAATAGATAATAATTTTCTTTGAGTTGGAGATAAATCAGCAACCAGTTTTTCCGAAGGCAATCTTAATAGGTTGCTAACAACTCCTAAATAGTCTCTATCCCCATCACCTCTTAGGACGCAGGAAATTTCCAAAGACTCTCTCACAGTTAAGAGCTC  >  BK006942/329348‑329937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑