Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCGTTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACT  >  BK006942/330078‑330648
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                               
TCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGTTGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGAGCT                                                                                                                                                                                                                                                                                >  SRR13385772.519848/1‑301 (MQ=60)
                                               ATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTG                                                                                                                                                                                                                                  <  SRR13385772.54017/300‑1 (MQ=60)
                                                 ATATCCAGAAGCCTCGTTGATCAATCTTTTGTCTCCAATGGTATAATTGATACTTTTCCAGAACATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGAAGTTTAATATTGTAAACAGTATCGTATTGATGCGAGACAGATGAAAACGAAGCGGACCAAGCAGAAAAATGTGCAATCGGGGCCTTGGGAGTACATACGCCATCATTCCTGGTAATAACGCTACTATTATCCTTCTTTTGCCTATCCAGCAAGGGACAGTACCTTTGG                                                                                                                                                                                                                                  >  SRR13385772.1219380/1‑298 (MQ=60)
                                                           GCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCC                                                                                                                                                                                                                     <  SRR13385772.406072/301‑1 (MQ=60)
                                                                                                                        GCTTTTGCGGTTCCATAGCTACTGATTCCTTAGGATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATTCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATGCCGCTGCTAGTAAAGAGCA                                                                                                                                                        <  SRR13385772.1177181/301‑1 (MQ=60)
                                                                                                                                   TCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTAT                                                                                                                                                                                                                        <  SRR13385772.810698/226‑1 (MQ=60)
                                                                                                                                                  TCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCA                                                                                                                               <  SRR13385772.408785/300‑1 (MQ=60)
                                                                                                                                                                      AGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTC                                                                                                          >  SRR13385772.603824/1‑301 (MQ=60)
                                                                                                                                                                                              GTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTT                                                                                   <  SRR13385772.724102/300‑1 (MQ=60)
                                                                                                                                                                                                 ATCAGTATCGTATTGCTGCGCGACTGATGGAACAGAAGCGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTAACTACGACATCATTGATGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTCTCTTTTGAGCTAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGAAAAGAGAAAAATAGGAAGAAACACAGAAACCAAATGATAATACAGAAATTTCACAACACGTGATGGTAAGAGTATTTAAAT                                                                               >  SRR13385772.996090/1‑301 (MQ=60)
                                                                                                                                                                                                           TATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTT                                                                      >  SRR13385772.760628/1‑300 (MQ=60)
                                                                                                                                                                                                            ATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGaaatttcggtattatcattggg                                                                    >  SRR13385772.30469/1‑279 (MQ=60)
                                                                                                                                                                                                                                   GAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAAT                                             <  SRR13385772.452748/301‑1 (MQ=60)
                                                                                                                                                                                                                                                              ATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGTCTATTCAGTAAGGGACAGTATCTTTTTAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATGCCGCGGCTAGTAAAGAGCAAAATAGGAATAAACACAGAAACCCAACGATAATACCTAAATGTCTCCAAACGTTATGGTAAGTTTATTCCAATCGACTTTTTAAATAATCATGTCCTCTTACTTAATCGTTACCcaggttatagccattcccgg                  >  SRR13385772.659915/1‑281 (MQ=60)
                                                                                                                                                                                                                                                              ATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGG                  >  SRR13385772.965071/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                  GGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACA              <  SRR13385772.594728/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                   GGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACA              >  SRR13385772.7424/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                   GGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTCTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGCTAGTTATTCCCGCGCCATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTACAGAGCACAATAGGAAGAAACACAGAACCCCAATTATAATCCCAAAATTTCTCCACACGTCATGGTAAGTGTATTCCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCCAGGGTATCGCCTcaccaggaccac             >  SRR13385772.930581/1‑289 (MQ=60)
                                                                                                                                                                                                                                                                               ACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACT  <  SRR13385772.529435/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                               
TCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCGTTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACT  >  BK006942/330078‑330648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑