Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCAACAAAGTTGTCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCGTTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACTGAAT  >  BK006942/330065‑330652
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                   
TTCAACAAAGTTGTCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGT                                                                                                                                                                                                                                                                                                 >  SRR13385771.1252017/1‑301 (MQ=60)
                TACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTT                                                                                                                                                                                                                                                                                   <  SRR13385771.662962/299‑1 (MQ=60)
                               CACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTG                                                                                                                                                                                                                                                                  <  SRR13385771.1125016/301‑1 (MQ=60)
                                                                    AGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTT                                                                                                                                                                                                                              >  SRR13385771.884181/1‑300 (MQ=60)
                                                                       AGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTC                                                                                                                                                                                                                          <  SRR13385771.139520/301‑1 (MQ=60)
                                                                        GCGTCGTTTATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCC                                                                                                                                                                                                                         <  SRR13385771.1335696/301‑1 (MQ=60)
                                                                          GTCGTTGATCAATTTTTTGTCTCCAATGGTATCATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTCAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTG                                                                                                                                                                                                                                                                                               >  SRR13385771.1429484/1‑229 (MQ=60)
                                                                                       TTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGCAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTT                                                                                                                                                                                                          >  SRR13385771.1751090/1‑301 (MQ=60)
                                                                                        TTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTGCGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTT                                                                                                                                                                                                          <  SRR13385771.791082/300‑1 (MQ=60)
                                                                                                CCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTA                                                                                                                                                                                                  <  SRR13385771.6821/300‑1 (MQ=60)
                                                                                                   ATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGTAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCATTAAATTTTCTtttgtacac                                                                                                                                                                                               >  SRR13385771.533152/1‑291 (MQ=60)
                                                                                                            TTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTG                                                                                                                                                                                      >  SRR13385771.1055119/1‑300 (MQ=60)
                                                                                                              GATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGAT                                                                                                                                                                                    >  SRR13385771.1566362/1‑300 (MQ=60)
                                                                                                                    TTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTACCAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGCCTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATCGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTCTCTTTTGAGATAGTTCTTCCAGCGCAATAACTTTTCTCTAGTAAACAGCGGCGTGATATATTCC                                                                                                                                                                             >  SRR13385771.1307341/1‑301 (MQ=60)
                                                                                                                        CAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATCAATTTTCTCTCGTAAACAGAGGCGTGATATATTCCGCTG                                                                                                                                                                         >  SRR13385771.222978/1‑301 (MQ=60)
                                                                                                                                GACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGACGTGGAAAAATTGGCTATCGGGGTCTTGGGCGTACATAAGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTACAGCGCAATAAATTTTACCTAGTAAACAGAGGCGTGC                                                                                                                                                                                     >  SRR13385771.539127/1‑281 (MQ=60)
                                                                                                                                                     AGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACA                                                                                                                                             <  SRR13385771.218469/300‑1 (MQ=60)
                                                                                                                                                         ACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAG                                                                                                                                          <  SRR13385771.1873081/299‑1 (MQ=60)
                                                                                                                                                                                AACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATT                                                                                                                  <  SRR13385771.772001/300‑1 (MQ=60)
                                                                                                                                                                                            TGGTTGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATGCTTTTTTTGGCTATTCAGAAAGTGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGAGAATACCGAAAGTGCTCCACACGTG                                                                                                      >  SRR13385771.259788/1‑300 (MQ=60)
                                                                                                                                                                                                         TTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCC                                                                                                             <  SRR13385771.1575406/280‑1 (MQ=60)
                                                                                                                                                                                                                      CGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTT                                                                           <  SRR13385771.61691/301‑1 (MQ=60)
                                                                                                                                                                                                                                 GAGACTGATGGAACATAAGAGGATGAAGTGGAAAAATTGTCTATCGTGGTCTTTGGAGTACATACTCCATCTTTGTTGGTAATAGCTCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGATGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCAC                                                                <  SRR13385771.1230000/301‑1 (MQ=60)
                                                                                                                                                                                                                                                            GTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGACATTTCTCCACACGTGATGGTAAG                                                                                              >  SRR13385771.1398493/1‑244 (MQ=60)
                                                                                                                                                                                                                                                                                                ACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACTGAAT  <  SRR13385771.607142/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                ACGCCATCATTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACTGAAT  <  SRR13385771.710187/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                   
TTCAACAAAGTTGTCTTACCAGCACCAGATTCACCCATTAGGGCAGTTAATCCGGAACTTATATATCCAGAAGCGTCGTTGATCAATTTTTTGTCTCCAATGGTATAATTGATATTTTTCCAGGAGATGACGTGCTTTTGCGTTTCCATAGCTACGGATTCCTTAGTATGATTGTTAACAGTTTCATCTGGATGTTTAATATTGTAATCAGTATCGTATTGATGCGAGACTGATGGAACAGAAGAGGATGAAGTGGAAAAATTGGCTATCGGGGTCTTGGGAGTACATACGCCATCGTTGTTGGTAATAGCGCTTTTATTATTCTTTTTTTGGCTATTCAGAAAGGGACAGTATCTTTTGAGATAGTTATTCCAGCGCAATAAATTTTCTCTAGTAAACAGAGGCGTGATATATTCCGCTGCTAGTAAAGAGCAAAATAGGAAGAAACACAGAAACCCAATGATAATACCGAAATTTCTCCACACGTGATGGTAAGTGTATTTCAATCCACTTTTTAAATAATCACGGCCTCTGACGTAATCGTTACCTAGGGTAGCGCCTTGCCAGGCACAAGCTTTATGACTGAAT  >  BK006942/330065‑330652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑