Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A0 F0 I1 R1
|
6054 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGAGCTGGACATGTTTACGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCATCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTTTTTTTATCTGTAAGGTGTCATGAAAATGGGTTAAACACTCCTCCATGGTTCCG > BK006942/331088‑331681
|
TGGAGCTGGACATGTTTACGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCG > SRR13385772.793926/1‑301 (MQ=60)
CATGTTTACGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCGAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATC > SRR13385772.495969/1‑301 (MQ=60)
ACGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCT < SRR13385772.1145035/300‑1 (MQ=60)
CGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGATTGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGG > SRR13385772.702379/1‑301 (MQ=60)
ACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATT > SRR13385772.919243/1‑301 (MQ=60)
AGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGTGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATG > SRR13385772.264666/1‑301 (MQ=60)
GCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGC > SRR13385772.20340/1‑301 (MQ=60)
GTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAACCTGGGGGCGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTC > SRR13385772.592748/1‑301 (MQ=60)
AAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTAT > SRR13385772.1180534/1‑300 (MQ=60)
AAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTAT > SRR13385772.68123/1‑299 (MQ=60)
AGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTG > SRR13385772.451826/1‑301 (MQ=60)
GAATAGTATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGTGACCCAATAACCAAAGACTGCACCACAACAGAAACAAAGTGAGAAATCAAGTAGTTTCTGTCACCAAGGATTCTGTCGAAAGCGCTTACAGGGCACGTTTTCAGTTGCGTCTTTATCGGAATACTAAAAATGGGGGAGAGATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTTATGGCCTTCCAGTGTTTATAGTATGGAGACTGA < SRR13385772.1208080/301‑1 (MQ=60)
AAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAA < SRR13385772.167781/282‑1 (MQ=60)
AAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTA < SRR13385772.830056/301‑1 (MQ=60)
AATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCCTTATTGATGTTTAAAGCT > SRR13385772.880379/1‑301 (MQ=60)
GAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTC > SRR13385772.371906/1‑298 (MQ=60)
AATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATAGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGA < SRR13385772.970550/301‑1 (MQ=60)
CACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTA < SRR13385772.885148/301‑1 (MQ=60)
ATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGCGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTT > SRR13385772.1257970/1‑301 (MQ=60)
TAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTA < SRR13385772.614422/214‑1 (MQ=60)
CCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATG < SRR13385772.427586/252‑1 (MQ=60)
ATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGCTATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCAATGTTTTTGAAGTGCTGGCCTTCCAGTGTTTATAGTCTGGCGACTGAATCCCTACTGTCTGCAAATCTGTTTCATTATTGATGATTAAAGCTTGATTTTCTTCAGCAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGCTGTTCAATATTac > SRR13385772.1052181/1‑298 (MQ=60)
TGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATCCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATGGCATGGCGACTGAATCCATAATGTATGCAAATCTGCTTCATTATTGCTGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAACTTTACGATTGATagatcggacgcgc > SRR13385772.951353/1‑287 (MQ=60)
GATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGCTGGCCTTCCAGTGTTTCTAGTATCGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGAGGTTTAAAGCTTGCTTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACGATGGAATTAGACGTTTCCTGTAACTTAAAATTTAAGATTGATGTTAAATATTCAAT > SRR13385772.214706/1‑300 (MQ=60)
GATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATA < SRR13385772.778585/301‑1 (MQ=60)
ACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTT > SRR13385772.604702/1‑301 (MQ=60)
GCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTA < SRR13385772.496236/173‑1 (MQ=60)
GTTGCGGCTTTAGCGGAATACTAAAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTTTTTTTATCTGTAAGGT < SRR13385772.929585/301‑1 (MQ=60)
AAAATGGGGGAGATATCGTCCGGATTAACATCTTTTCTGGTGCATTCTTTCACTGTTTTTGGAGTGATTGCCTTCCAGTGTTTATAGTATGGGGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTTTTTTTATCTGTAAGGTGTCATGAAAATGGGTTAAACACT < SRR13385772.289047/301‑1 (MQ=60)
ATCGTACGGATTAACATGTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACAGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTAAAGAACAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTTTTTTTATCTGTAAGGTGTCATGAAAATGGGTTAAACACTCCTCCATGGTTCAG < SRR13385772.918562/301‑1 (MQ=60)
|
TGGAGCTGGACATGTTTACGAACGACGGGTTGCCTTTGAAAGGAAGCAGGCATGTCGGCGAGAGAAAGAAATGTAAAGAATAGGATGGAAAAGAAAGTTAAAGATCCTCTAGAAAACGAACCAATTGTTGTCAGGGGAATGTTATAAAAAAGGGACCCAATAACCAAAGACTGCACCACAACAGAAACAAATTGAGAAATCAAGTAGTTTCTGTCACCAATGATTCTTTCGAAAGCTCTTACAGTGCACGTTTTCAGTTGCGTCTTTAGCGGAATACTAAAAATGGGGGAGATATCATCCGGATTAACATCTTTTCTGGTGCATTCTTGCACTGTTTTTGAAGTGATGGCCTTCCAGTGTTTATAGTATGGAGACTGAATCCATAATGTATGCAAATCTGTTTCATTATTGATGTTTAAAGCTTGATTTTCTTCAGAAACAACAGATGGAGTGTCAAGACCAACAATGGAATTAGACGTTTCCTTGAACTTAAAATTTAAGATTGATGTTAAATATTCAATAATACAATCGTTAGGGTTTTTTTTTATCTGTAAGGTGTCATGAAAATGGGTTAAACACTCCTCCATGGTTCCG > BK006942/331088‑331681
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |