Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAATTTGTCCTGAGGTTTCTTCGTAGTGATAGCGAACACCTGTTCGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGC  >  BK006939/336288‑336827
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                      
GAATTTGTCCTGAGGTTTCTTCGTAGTGATAGCGAACACCTGTTCGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCG                                                                                                                                                                                                                                                 >  SRR13385772.999299/1‑301 (MQ=60)
      GTCCTGAGGTTTCGTCGTAGTGATAGCGAACACCTGTTCGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCATTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGA                                                                                                                                                                                                                                           <  SRR13385772.571583/301‑1 (MQ=60)
                           GATAGCGAACACCTGTTCGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGG                                                                                                                                                                                                                      >  SRR13385772.1160422/1‑301 (MQ=60)
                            ATAGCGAACACCTGTTCGTCGTTACAGTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGG                                                                                                                                                                                                                     <  SRR13385772.8465/301‑1 (MQ=60)
                                 GAACACCTTTTCGTCGTTACATTTGAGAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTC                                                                                                                                                                                                                <  SRR13385772.794584/301‑1 (MQ=60)
                                            CGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTACTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCA                                                                                                                                                                                                     <  SRR13385772.1122709/301‑1 (MQ=60)
                                                       TTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAG                                                                                                                                                                                                                                     >  SRR13385772.130132/1‑258 (MQ=60)
                                                             ACATCGTAGTACCTACACACCCTTCTTCTCTTGTCTGCAAAAGACCGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGCGCGACGTCTTCACCTTCTTTCAGCAGCGCGACCACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCACTGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTA                                                                                                                                                                                    <  SRR13385772.138863/301‑1 (MQ=60)
                                                                                                TGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGA                                                                                                                                                  >  SRR13385772.1300736/1‑300 (MQ=60)
                                                                                                 GCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGA                                                                                                                                                  <  SRR13385772.278863/299‑1 (MQ=60)
                                                                                                     AAGAACGCACTTATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCACTACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTC                                                                                                                                            >  SRR13385772.1249982/1‑301 (MQ=60)
                                                                                                                       GGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTTTCGCATCCACTACCACTCCCCTCTGTGGTGGGAGCACAACAGACCTCGATTATCCGTGAAGAAATTTCATTCAATGTCTTTCCTTTCCGCAGGCCGAGATGAACCACATACACACCAACTTGGGGAGTCAAACAAACCCAGATACCAacaccagccaaaattaccacatcatccacatcataaaccaaaaaaacaccgagaatgtacaggacac                                                                                                                           >  SRR13385772.161681/1‑233 (MQ=60)
                                                                                                                             CCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCAC                                                                                                                    >  SRR13385772.340881/1‑301 (MQ=60)
                                                                                                                               TTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACT                                                                                                                   >  SRR13385772.489665/1‑300 (MQ=60)
                                                                                                                                                  CCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAA                                                                                               <  SRR13385772.879627/301‑1 (MQ=60)
                                                                                                                                                   CCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTTGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAAT                                                                                              <  SRR13385772.995812/301‑1 (MQ=60)
                                                                                                                                                           CGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTT                                                                                      >  SRR13385772.784615/1‑301 (MQ=60)
                                                                                                                                                                 CTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTT                                                                                >  SRR13385772.863618/1‑301 (MQ=60)
                                                                                                                                                                  TTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATATAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCATCGGGGCCCAATTTGGGGTTGGATTTG                                                                               >  SRR13385772.482791/1‑301 (MQ=60)
                                                                                                                                                                              CAGCAGCGCGACAACCACTATACTCATTGTGTCGCATCCAATACCCTTCCCCTCTGTTGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATC                                                                    <  SRR13385772.1079922/300‑1 (MQ=60)
                                                                                                                                                                                    CGCGACAACCACTATACTCATGTTGTCGCATCCAATAACCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATATGGGGTTGGATTTGAACTCAAAATCACCAATG                                                             >  SRR13385772.336615/1‑301 (MQ=60)
                                                                                                                                                                                            CCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTA                                                                                                                                                                                    <  SRR13385772.630836/174‑1 (MQ=60)
                                                                                                                                                                                                                                    TGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGA               >  SRR13385772.1866/1‑299 (MQ=60)
                                                                                                                                                                                                                                          GGGAGCACAACAGACATCGATGATCCGTGAAGAACTTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGACCAATTTGGGGTTGGCTTTGAACTCAAAATCACCAATGGCACGTGAGAGCGCCAAGTTAACGTTGACCCTATCCATTTCTACGAAGACATC        >  SRR13385772.369367/1‑300 (MQ=60)
                                                                                                                                                                                                                                               CACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTAACCCTATCCATTTCTACGAAGCCATCAGCTGC  >  SRR13385772.672990/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                     TGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCG                                                <  SRR13385772.854229/233‑1 (MQ=60)
                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                      
GAATTTGTCCTGAGGTTTCTTCGTAGTGATAGCGAACACCTGTTCGTCGTTACATTTGGAAAAATCGTAGTAACTAAACACCCTTCTTCTCTTGTCTGCAAAAGAACGCACTGATGTGCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGC  >  BK006939/336288‑336827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑