Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACATACTAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATCCGCTATGGT  >  BK006939/336413‑336994
                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                    
CCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCAC                                                                                                                                                                                                                                                                                           >  SRR13385772.340881/1‑301 (MQ=60)
  TTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACT                                                                                                                                                                                                                                                                                          >  SRR13385772.489665/1‑300 (MQ=60)
                     CCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAA                                                                                                                                                                                                                                                                      <  SRR13385772.879627/301‑1 (MQ=60)
                      CCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTTGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAAT                                                                                                                                                                                                                                                                     <  SRR13385772.995812/301‑1 (MQ=60)
                              CGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTT                                                                                                                                                                                                                                                             >  SRR13385772.784615/1‑301 (MQ=60)
                                    CTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTT                                                                                                                                                                                                                                                       >  SRR13385772.863618/1‑301 (MQ=60)
                                     TTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATATAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCATCGGGGCCCAATTTGGGGTTGGATTTG                                                                                                                                                                                                                                                      >  SRR13385772.482791/1‑301 (MQ=60)
                                                 CAGCAGCGCGACAACCACTATACTCATTGTGTCGCATCCAATACCCTTCCCCTCTGTTGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATC                                                                                                                                                                                                                                           <  SRR13385772.1079922/300‑1 (MQ=60)
                                                       CGCGACAACCACTATACTCATGTTGTCGCATCCAATAACCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATATGGGGTTGGATTTGAACTCAAAATCACCAATG                                                                                                                                                                                                                                    >  SRR13385772.336615/1‑301 (MQ=60)
                                                                                                       TGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGA                                                                                                                                                                                      >  SRR13385772.1866/1‑299 (MQ=60)
                                                                                                             GGGAGCACAACAGACATCGATGATCCGTGAAGAACTTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGACCAATTTGGGGTTGGCTTTGAACTCAAAATCACCAATGGCACGTGAGAGCGCCAAGTTAACGTTGACCCTATCCATTTCTACGAAGACATC                                                                                                                                                                               >  SRR13385772.369367/1‑300 (MQ=60)
                                                                                                                  CACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTAACCCTATCCATTTCTACGAAGCCATCAGCTGC                                                                                                                                                                         >  SRR13385772.672990/1‑301 (MQ=60)
                                                                                                                                        TGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCG                                                                                                                                                                                                                       <  SRR13385772.854229/233‑1 (MQ=60)
                                                                                                                                             AAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATATTGGGAAGTAAAACAATCACAGATACCATCACAGGCTAAGATTACAACCTCGTACCTCTCGTAATCTAGAGAATGCTAGAGCATGTCCGGGACACATGTAACTATTTGCTCCTCGGGGACCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCACGTTAACGTTGACCCTATCCATTTCTACGACGCCATCAGCTGCCACCATCCGTGCTTTTTCGCTTGCacg                                                                                                                                              >  SRR13385772.1280196/1‑298 (MQ=60)
                                                                                                                                                   CATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGG                                                                                                                                        >  SRR13385772.1258369/1‑301 (MQ=60)
                                                                                                                                                                    TCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGA                                                                                                                         <  SRR13385772.302495/299‑1 (MQ=60)
                                                                                                                                                                              CGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCA                                                                                                                                                                       <  SRR13385772.385121/243‑1 (MQ=60)
                                                                                                                                                                                     AACCAAGTCCACCCAATCTTGGGAAGTCAAACACTCCCAGATACCATCACAGGCTCAGATTACAAACTCGTCCCTATCGTAATCTCGAGAATGCTCGAGAATGTCCGGGACACATGTCACTCTTTGCTCCTCGGGGACCACTTTGGGGTTGGATTTGAACTCAAAATCACCACTGGCACGAGAGAGCGACAAGTTACCGTTGACCCTATCCCTTTCTACGCAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGCCTTGTGATCGTCTGATCATGCCTTTGCGTTCCCT                                                                                                      >  SRR13385772.1024810/1‑301 (MQ=60)
                                                                                                                                                                                           GTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTG                                                                                                >  SRR13385772.280145/1‑301 (MQ=60)
                                                                                                                                                                                                         GGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCT                                                                                  <  SRR13385772.159712/301‑1 (MQ=60)
                                                                                                                                                                                                                 AAACAATCCCAGATACCATCACAGGATAAGATTACAAACTCGTCCCTATCGTAATCTAGCGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCACCTCGGGGCCAAATTTGGGGTTGGATTTGAACTCAAAATCACCACTGGCACGAGAGAGAGCAAAGTTACCGCTGCCCCTATCCATTTCTCCGAAGCCATCAGCTGCCACAAT                                                                                                                                                                   >  SRR13385772.14858/1‑212 (MQ=60)
                                                                                                                                                                                                                      ATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATGTGGGGTTGGGTTTGAACTCAAAATCACCAATGGCACGAGATAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGTTTCTACGGTCACCAGCG                                                                     >  SRR13385772.177372/1‑301 (MQ=60)
                                                                                                                                                                                                                                                   CAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACTT                                        <  SRR13385772.117866/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                ATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACTTTGATACTAATA                             <  SRR13385772.1287623/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                     AATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCATTTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCCGCGGTACCAC                                                              >  SRR13385772.220380/1‑261 (MQ=60)
                                                                                                                                                                                                                                                                                    CGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACCAACCAACAAGTTCTGGGACTTTGATACTAATCTGGATGTAGCCGTACATCCGCT       >  SRR13385772.721382/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                         ATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCACTTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATCCGCTATGGT  <  SRR13385772.1015383/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                                    
CCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACATACTAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATCCGCTATGGT  >  BK006939/336413‑336994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑