Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACATACTAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATC  >  BK006939/336405‑336985
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                           
GCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATTTCCGGGAC                                                                                                                                                                                                                                                                                           >  SRR13385771.535394/1‑300 (MQ=60)
             GAATTCATACGGTGGTTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTT                                                                                                                                                                                                                                                                             <  SRR13385771.1624846/301‑1 (MQ=60)
                           GCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCCAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCC                                                                                                                                                                                                                                                               >  SRR13385771.1478466/1‑301 (MQ=60)
                                  TGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTG                                                                                                                                                                                                                                                         <  SRR13385771.205603/300‑1 (MQ=60)
                                               cacttgcttgCAGCAGCGCGACAACCGCTATACTCATGTTATCGCATCCAATACCCGTCGCCTCTGTGGTGGGAGCACAACATACATCGAGGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCTAGATGAACCAAGGCCACACAATCGTGTGAAGTCAAACAAGCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTGGCGCCGCGGGGCCCAATTTGGGGTTGGATTTGAA                                                                                                                                                                                                                                           <  SRR13385771.1512735/291‑1 (MQ=60)
                                                                            ATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGC                                                                                                                                                                                                               <  SRR13385771.134541/300‑1 (MQ=60)
                                                                                                   ACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAACTTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTACACACAATCTTGGGAAGTCACACACTCCCCGATACCATCCCAGGCTAAGCTTCCAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCCATTTGGGGTTGGATTTGCACTCAAAATCACCACTGGACCGAGAGAGCGCCAAGTTACCGTTGACCCTATCC                                                                                                                                                                                       >  SRR13385771.1357574/1‑301 (MQ=60)
                                                                                                    CCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCTCAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCC                                                                                                                                                                                       >  SRR13385771.731735/1‑300 (MQ=60)
                                                                                                          CCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCACAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCT                                                                                                                                                                                 >  SRR13385771.1472034/1‑300 (MQ=60)
                                                                                                           CCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCT                                                                                                                                                                                           <  SRR13385771.1285927/289‑1 (MQ=60)
                                                                                                                     GGGAGCACAACAGACATCGATGATCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACAATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGACTGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATC                                                                                                                                                                      >  SRR13385771.1302155/1‑300 (MQ=60)
                                                                                                                            AAACAGACATCGATGAGCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAAGCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCA                                                                                                                                                              <  SRR13385771.489927/301‑1 (MQ=60)
                                                                                                                                            TCCGTGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCACCAGCTGCCACAATACGTGATTTTTC                                                                                                                                              >  SRR13385771.694676/1‑301 (MQ=60)
                                                                                                                                                     AAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCGCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAG                                                                                                                                     <  SRR13385771.1148097/301‑1 (MQ=60)
                                                                                                                                                                AATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCACTTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCGTGT                                                                                                                          >  SRR13385771.1854846/1‑301 (MQ=60)
                                                                                                                                                                   GGCTTGCCGTGGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGAT                                                                                                                       <  SRR13385771.1337738/301‑1 (MQ=60)
                                                                                                                                                                                  AGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCT                                                                                                        >  SRR13385771.1478845/1‑301 (MQ=60)
                                                                                                                                                                                                                   GAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTAC                                                                       <  SRR13385771.1880603/301‑1 (MQ=60)
                                                                                                                                                                                                                                        CCATCCCAGGCTAAGCTTACAACCTCGTCACTATCGTACTCTAGAGCATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACA                                                  <  SRR13385771.577591/301‑1 (MQ=60)
                                                                                                                                                                                                                                          ATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACAcacc                                                >  SRR13385771.552101/1‑297 (MQ=60)
                                                                                                                                                                                                                                               gggctaggtttactccCTCGTCCCTATCGTCATCTAGAGGATGCTCGGGAATGTCCGGAACCCATGTCACTGTTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCTCCGATGGCGCGAGAGAGCGCCCAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCGCAAGACGTGATTTTTCGCTTGCTAGAGTGGGCTTGGGATCGTATGATGATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAA                                           <  SRR13385771.1759274/285‑1 (MQ=60)
                                                                                                                                                                                                                                                     AGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCACTTTGGGGTAGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATTACTTTGAGTTCCCGTCGGTGGCGAGTACGGTTCTCCTGTCACCAGCGTTACacaacaccaacaacttctt                                     >  SRR13385771.1653731/1‑282 (MQ=60)
                                                                                                                                                                                                                                                          ACATACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACT                                <  SRR13385771.1477274/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                  AGAGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCG        <  SRR13385771.894180/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                    AGAATGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACACACCAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTA      <  SRR13385771.1887304/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                        TGCTCGAGAATGTCCGGGACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCCCACACCAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATC  >  SRR13385771.1787761/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                           
GCGGTGGGCCTTGGACTTCATACGGTCGCTCCATTGAGCGACGTCTTCACCTTCTTTCAGCAGCGCGACAACCACTATACTCATGTTGTCGCATCCAATACCCGTCCCCTCTGTGGTGGGAGCACAACAGACATCGATGATCCGCGAAGAAATTTCATTCAATGTCTTGCCTTCGCGAAGGCCGAGATGAACCAAGTCCACACAATCTTGGGAAGTCAAACAATCCCAGATACCATCACAGGCTAAGATTACAAACTCGTCCCTATCGTAATCTAGAGAATGCTCGAGAATGTCCGGAACACATGTCACTATTTGCTCCTCGGGGCCCAATTTGGGGTTGGATTTGAACTCAAAATCACCAATGGCACGAGAGAGCGCCAAGTTACCGTTGACCCTATCCATTTCTACGAAGCCATCAGCTGCCACAATACGTGATTTTTCGCTTGCTAGAGTGGGCTTGTGATCGTATGATAATGCCTTTGCGTTCCCGTCGGTGGCGAGTACGGTTCTACTGTCACCAGCGTTACCACATACTAACAAGTTCTGGGACTTTGATACTAATATGGATGTAGCCGTACATC  >  BK006939/336405‑336985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑