Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	6081	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TACTGTACGTTACATGTTTTTCAGACCAGAAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCAATTTGATAAAAGTCGGCTTGCTATTAGTCGCT  >  BK006938/343763‑344300

TACTGTACGTTACATGTTTTTCAGACCAGAAGATGTGGAATGGTTCACGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACATTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATT                                                                                                                                                                                                                                                 >  SRR13385771.1172366/1‑301 (MQ=60)

   TGTACGTTACATGTTTTTCAGACCAGAAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCT                                                                                                                                                                                                                                               <  SRR13385771.1108169/300‑1 (MQ=60)

          TACATGTTTTTCAGACCAGAAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGATATGTCCTTGTACAAAAGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAA                                                                                                                                                                                                                                        <  SRR13385771.1281420/300‑1 (MQ=60)

                 TTTTCAGACCAGAAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTCCCTTGGAATGGTATGTAAAGTGATAAACATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATC                                                                                                                                                                                                                                 >  SRR13385771.1373629/1‑300 (MQ=60)

                             AAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTTTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTT                                                                                                                                                                                                                    >  SRR13385771.415314/1‑301 (MQ=60)

                                  GTGGAATGTTGCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGTTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGTTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTTGAATGGTAGGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATATAGAAGTACGTGATATCTATATATATAATATAATGCTAATAAAATAGTAACAACGAAACTTTTGATAA                                                                                                                                                                                                                >  SRR13385771.418173/1‑300 (MQ=60)

                                     GAATGGTTCAAGTCTATCCCACTGTGCACCAAATCAGGTAGGGCAGGTTTCATTAAAGAAAGTGTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGT                                                                                                                                                                                                            <  SRR13385771.88303/301‑1 (MQ=60)

                                              AAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCGAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTATATA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCG                                                                                                                                                                                                      >  SRR13385771.460596/1‑300 (MQ=60)

                                                    ATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAACTATACACGTC‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGCTAAAGGTAAGTCGATACCTGTT                                                                                                                                                                                             >  SRR13385771.1508662/1‑301 (MQ=60)

                                                      CCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAAGTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGT                                                                                                                                                                                         <  SRR13385771.176163/301‑1 (MQ=60)

                                                                  CAAATCAGGTAGGTCAGGTTTCAGTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAA                                                                                                                                                                               <  SRR13385771.384710/301‑1 (MQ=60)

                                                                               GCAGGTTTCAGTAAAGAAAGTGTGTGTACGCATGGTTATTTCAAGGCTACAGTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGTCCCATGCCTTCGTTAACTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTA                                                                                                                                                                <  SRR13385771.1084350/301‑1 (MQ=60)

                                                                                                      GGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑‑‑‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTAT                                                                                                                                       >  SRR13385771.1296024/1‑301 (MQ=60)

                                                                                                                       TCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATG                                                                                                                           <  SRR13385771.1666890/300‑1 (MQ=60)

                                                                                                                        CAAGGCTACATTTGATGGTAAATTATCTGCGCAGGTTGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAAGAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAAGACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGA                                                                                                                          <  SRR13385771.1514677/300‑1 (MQ=60)

                                                                                                                                     GATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TATCTATATATATATATATATATATAT‑‑CAGCACGTGAGATCTATTTGTATAATATAATGCTAATAACATAGTATCAAAGATACTCTTGATCAAGGTCACTAGATACCTGCTCCCTTCCCATCAACTACATATGCAACTTCTTTTCTAGAGGTATTACTGCATTATGTGAAAAATATGCCTTTTTATCAAca                                                                                                             >  SRR13385771.1626281/1‑298 (MQ=60)

                                                                                                                                      ATGGTAAATTATCTGCGCAGGATGTTGTGGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGGGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAA                                                                                                          <  SRR13385771.1600817/300‑1 (MQ=60)

                                                                                                                                                           ATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCC                                                                                      >  SRR13385771.1364599/1‑301 (MQ=60)

                                                                                                                                                                      ATGTACTTGTAAAAACGTATGTGGACCATGCCTTCGTTACATTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTT                                                                            <  SRR13385771.561612/300‑1 (MQ=60)

                                                                                                                                                                            TTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTT                                                                     >  SRR13385771.1043506/1‑301 (MQ=60)

                                                                                                                                                                                                                TGGAATGGTATGTAAAGTGATAAAAATATACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTGCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTC‑TTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCA                                  <  SRR13385771.1770825/299‑1 (MQ=60)

                                                                                                                                                                                                                                           AGACACT‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGGACGTGAGATTTAATTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCAATTTGATAAAAGTCGGCTTGCTATTAGTCG    <  SRR13385771.336768/301‑1 (MQ=60)

                                                                                                                                                                                                                                             ACACGTA‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCAATTTGATAAAAGTCGGCTTGCTATTAGTC     <  SRR13385771.1693466/300‑1 (MQ=60)

                                                                                                                                                                                                                                                 acttaTA‑‑TATATATAGATAGATATATATAT‑‑AAGTACTTGATATCTATTTGTATAATAGTAAGCTAATAAAAGAGTATCAACGATACGGTGAATAAAGGTAAGGTGAGACCTGTTACGTTCGCATAAAATACAAATGCCATTTATTTTTTAGAGTTAGTAATGCATTATGTGTAAATTATGACTTTTTATCTAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCAATTTGATAAAAGTCGGCTTGCTATTAGTCGCT  <  SRR13385771.121105/296‑1 (MQ=60)

TACTGTACGTTACATGTTTTTCAGACCAGAAGATGTGGAATGGTTCAAGTCTATCCCACTGTTCACCAAATCAGGTAGGTCAGGTTTCATTAAAGAAAGTTTGGGTACGCATGGTTATTTCAAGGCTACATTTGATGGTAAATTATCTGCGCAGGATGTTGTTGCTATGTCCTTGTACAAACGTATGTGGCCCATGCCTTCGTTACCTTGGAATGGTATGTAAAGTGATAAAAATATACACG‑‑‑‑TA‑‑TATATATATATATATATATATAT‑‑AAGTACGTGAGATCTATTTGTATAATATAATGCTAATAAAATAGTATCAACGATACTGTTGATAAAGGTAAGTCGATACCTGTTCCGTTCGCATCAAATACAAATGCCACTTATTTTGTAGAGGTATTAATGCATTATGTGAAAATTATGACTTTTTATCAAGCAAAATAAATTTGCTACTTGTGCCCTTTTTCTTTCTTTTTTTTTTTATTTGATATGCGTGCCTTTAGCATCCTCCAATTTGATAAAAGTCGGCTTGCTATTAGTCGCT  >  BK006938/343763‑344300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`