Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATCCGAAATTTTAAATGGCACATCGGCAGACGGTAATTCCGAGTTTCACGACTTCGCTGAGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGAAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTAAAGGAATATTTAGTGAACGATGCCAAAGTTATTTTGAAGAAACTAAGTGCCGTTGGATACCCTGATGCACAGTACCTTCT  >  BK006939/352099‑352668
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
ATCCGAAATTTTAAATGGCACATCGGCAGACGGTAATTCCGAGTTTCACGACTTCGCTGCGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATACTGTGGCCAAATTTCACCTTGGCAAGGAAAAC                                                                                                                                                                                                                                                                               <  SRR13385772.375488/301‑1 (MQ=60)
            AAATGGCACATCGGCAGACGGTAATTCCGAGTTTCACGACTTCGCTGAGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTT                                                                                                                                                                                                                                                                    <  SRR13385772.625091/300‑1 (MQ=60)
                      TCGGCAGACGGTAATTCCGAGTTTCACGACTTCGCTGAGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCGCTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATGTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGA                                                                                                                                                                                                                                                          >  SRR13385772.246977/1‑300 (MQ=60)
                                             TCACGACTTCGCTGAGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGG                                                                                                                                                                                                                                  >  SRR13385772.60989/1‑301 (MQ=60)
                                                            GCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTAAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTAACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAA                                                                                                                                                                                                                   <  SRR13385772.602345/301‑1 (MQ=60)
                                                               ggggggggggggggggggggggggggggggggggggggggggggggtaagaggtgggcgagctgagtaagcaaagggcgtcaggctcttcaaacggtatgcagagaagtacaagctgaagagcacttcctcgacaagggccactacattctcgcatgtcgaatagtccttgccacacacatgcaGTGACTGCATCACAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTCGCTACACAAATGGAAAAACATTGAAATGTACGGGGAGGTAGTTAAGAAAAC                                                                                                                                                                                                                 >  SRR13385772.1289729/185‑300 (MQ=60)
                                                                                         CTCTGTCGTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGTATCATGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGGTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAG                                                                                                                                                                                        <  SRR13385772.1117726/299‑1 (MQ=60)
                                                                                                TTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACA                                                                                                                                                                                >  SRR13385772.912734/1‑300 (MQ=60)
                                                                                                         ATCGAATGATTTGGACTGTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATGTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATAGTCTAATTTTCAGTATGCACAATACATTTTA                                                                                                                                                                      <  SRR13385772.348722/301‑1 (MQ=60)
                                                                                                                 ATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGG                                                                                                                                                              >  SRR13385772.1178145/1‑301 (MQ=60)
                                                                                                                                   ATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACT                                                                                                                                            >  SRR13385772.373574/1‑301 (MQ=60)
                                                                                                                                                                    ATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAA                                                                                                             >  SRR13385772.356149/1‑299 (MQ=60)
                                                                                                                                                                                              CCTAGACATGTGTCACTAGATTTCAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTA                                                                                  <  SRR13385772.134847/300‑1 (MQ=60)
                                                                                                                                                                                                      TGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTAAAGGAATAT                                                                         >  SRR13385772.1022303/1‑301 (MQ=60)
                                                                                                                                                                                                                                   GTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTAAAGGAATATTTAGTGAACGATGCCAAAGTTATTTTGAA                                            <  SRR13385772.339998/301‑1 (MQ=60)
                                                                                                                                                                                                                                                AAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTATAATTTTCAGTATGCACCATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTACAGGAATATTTAGTGAACGATGCAAACGTTATTTTGAAGAAACTAAGTGCC                               >  SRR13385772.148436/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                               GTGGCCAAATTTCACCTTGGCAAGGAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATCTACGGGGAGGTAGTTAAGAAAACTCAAGACATATACTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTAGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTAAAGGAATATTTAGTGAACGATGACAAAGTTATTTTGAAGAAACTAAGTGCCGTTGGAAACCCTGAAGCACAGTACCTTCT  >  SRR13385772.787747/1‑299 (MQ=60)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
ATCCGAAATTTTAAATGGCACATCGGCAGACGGTAATTCCGAGTTTCACGACTTCGCTGAGCCCCCTCCCTCTCAGAATGAATCTGTCGCTCTGTCTTTTAGTCAATCGAATGATTTGGACTTTTTGAATAATCCAAGCGGATCAGGCTCTTCAAACGATATCAATAGAAGTACAAGTTCCATTTCACTTCCTAGACATGTGTCACTAGATTTTAACGTTTACAATAGTCTTTGCCTCACAAATGAGGTGACTGCATCAGAATCACATAATGTGGCCAAATTTCACCTTGGCAAGAAAAACAAGAAGAGCTTGCTACCAAGATGGAAAACCATTGAAATGTACGGGGAGGTAGTTAAGAAAACTCAAGACATATATTCTAATTTTCAGTATGCACAATACATTTTAAGGGTAGGGTTGGATACCGAAAAACTACACGAACTTGTTAAGGAACTGGAGGATGAAAGCAATAGCTTCTCTGTAGATTCTTTAAAGGAATATTTAGTGAACGATGCCAAAGTTATTTTGAAGAAACTAAGTGCCGTTGGATACCCTGATGCACAGTACCTTCT  >  BK006939/352099‑352668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑