Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCTTACTATCCAAACAACAAAGAAGAATCAATCTCCACAAAACTTCAAGGTGATAAAATGTACATTCATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAAGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATTTGAGTCTACAGATTTTTCTATTTATCAAACTA  >  BK006934/352862‑353438
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                         
CTCTTACTATCCAAACAACAAAGAAGAATCAATCTCCACAAAACTTCAAGGTGATAAAATGTACATTCATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGGGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACAT                                                                                                                                                                                                                                                                                      >  SRR13385772.616529/1‑301 (MQ=60)
    TACTATCCAAACAACAAAGAAGAATCAATCTCCACAAAACTTCAAGGTGATAAAATGTACATTCATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATC                                                                                                                                                                                                                                                                                     <  SRR13385772.725799/298‑1 (MQ=60)
    TACTATACAAACAACAAAGAAAAAGCAATCTCCACAATGCTACAGGTTGATAAGATGTACAGTCATCAGTCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAATCCTCATATGTCGACGTGGAAAGAGTGGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAATAACTCTTAAGGGGCAAGGGTGTGAGTGCAGATGGTCAGTTCATTTTCGATCAAATCTTCAAGACCTTAGGAGATACTAAGTGGGTGGCTAAGGACATC                                                                                                                                                                                                                                                                                     <  SRR13385772.200394/298‑1 (MQ=60)
        ATCCAAACAACAAAGAAGAATCAATCTCCACAAAACTTCAATGTGATAAAATGTACATTCATCAAGCATTTGGAAGGCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATT                                                                                                                                                                                                                                                                               <  SRR13385772.838735/300‑1 (MQ=60)
                                                                  TCATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGT                                                                                                                                                                                                                                            >  SRR13385772.642986/1‑277 (MQ=60)
                                                                   CATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCATCATATGTCAACGTGGAAAGAGTTGAGAAGCTTATGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTATTAAGGGGCAAGGGTGCGAGTGCAGAGGGTAAGTTCATTTTCGATCAAATATTCACGACCATAGGAGATACTAAGTGGGTGGCTAAGGCCATCATTATTCTTGATGACGTTAAGATGCAACCTCAATACAAGGTCGAAGATATCAAAGTGCTACATG                                                                                                                                                                                                                     >  SRR13385772.903477/1‑299 (MQ=60)
                                                                           ATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTA                                                                                                                                                                                                            >  SRR13385772.104582/1‑300 (MQ=60)
                                                                                               AAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGTGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCTATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTC                                                                                                                                                                                       >  SRR13385772.315917/1‑301 (MQ=60)
                                                                                                           AACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTACGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGATACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGG                                                                                                                                                                           >  SRR13385772.459261/1‑301 (MQ=60)
                                                                                                               CATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGAACAAATCTTCAAGACCATAGGAGATACTCAGTGGGTGGATAAGGACATCATTATTCTTGATGACGTTAAGATGCAACCTCCATACAAGGTCGAAGATATCCAAGTGATACATGAGGGAAGTAACCAATCCATTACATTAATTAAAAGAATAGTGGAAA                                                                                                                                                                        >  SRR13385772.1281918/1‑300 (MQ=60)
                                                                                                                            ACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGC                                                                                                                                                            >  SRR13385772.279226/1‑299 (MQ=60)
                                                                                                                            ACAAATCAAACCATCATATGTCAAAGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAACGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGACGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGC                                                                                                                                                            >  SRR13385772.1178276/1‑299 (MQ=60)
                                                                                                                               AATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCT                                                                                                                                                        >  SRR13385772.1157491/1‑300 (MQ=60)
                                                                                                                                   AAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACGCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAAC                                                                                                                                                   <  SRR13385772.479157/301‑1 (MQ=60)
                                                                                                                                   AAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTAAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCT‑CATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACA                                                                                                                                                  <  SRR13385772.686490/301‑1 (MQ=60)
                                                                                                                                         TCATATGTCAACGTGGAAAGAGTTGAGACGCTTTTGAAAGAAAGTGTAATAGCATCTAACAAGCAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATCGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGACGATATCAAAGTGCTCCATGAGGGAAGTCACAAATCCATTACATTAATTCAAAGACTAGTGGAAAGAAGCCGGGCGCCGCTAGAACCCGACG                                                                                                                                             >  SRR13385772.444551/1‑301 (MQ=60)
                                                                                                                                                  AACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTACGGGGCACGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAACTATTCCAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGCAGATATCACAGTG                                                                                                                                                                                                                            >  SRR13385772.1252991/1‑213 (MQ=60)
                                                                                                                                                                 GAGAAGCTTTTGAAAGAAAGGGTAATAGCGTCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGGTCAAAGCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTGATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTA                                                                                                                     <  SRR13385772.887676/301‑1 (MQ=60)
                                                                                                                                                                   GAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAAT                                                                                                                   <  SRR13385772.672692/301‑1 (MQ=60)
                                                                                                                                                                           TGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACG                                                                                                           >  SRR13385772.769488/1‑301 (MQ=60)
                                                                                                                                                                                  AAGTTTAATAGCATATAAACAGAAAGAACGCTGAAGGGGCAAGGGTGTTAGTGCAGATGGTCCGTTCATTGTCGATCAAATCTGCAAGACCATAAGAGATACTAAGTGAGTAGATAAAGACATCATTATTCTTGATAACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGATACATGGGGGAAGTAACCAATCCGTTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGCACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGA                                                                                                    <  SRR13385772.790478/301‑1 (MQ=60)
                                                                                                                                                                                    GTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAATATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAA                                                                                                                                                    >  SRR13385772.113438/1‑251 (MQ=60)
                                                                                                                                                                                    GTATAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATA                                                                                                  <  SRR13385772.1042336/301‑1 (MQ=60)
                                                                                                                                                                                             CATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCT                                                                                                                                                        >  SRR13385772.1024927/1‑238 (MQ=60)
                                                                                                                                                                                              ATCTAAAAAGAAAGAACTCTTAAGGGGTAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACAT                                                                                                                                                                                             >  SRR13385772.1260418/1‑200 (MQ=60)
                                                                                                                                                                                                 ctgaccctctGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTG                                                                                                                                                                                                                            <  SRR13385772.961293/156‑1 (MQ=60)
                                                                                                                                                                                                      AGAAAGAACTCTTAAGGGGCAAGTGTGTGAGTGCAGAGGTTCAGTTCATTTTCGATCAAATCTTCAAGACCATATGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAATCTGGGAGCAGCTAGAACAATACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTT                                                                                <  SRR13385772.375327/301‑1 (MQ=60)
                                                                                                                                                                                                                CTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTT                                                                      >  SRR13385772.544625/1‑301 (MQ=60)
                                                                                                                                                                                                                                     TGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATACTATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTT                                                 >  SRR13385772.859243/1‑301 (MQ=60)
                                                                                                                                                                                                                                                    CAATTTCGATCAAATCTTCAAGACCATAGGAGATACTACGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATT                                  <  SRR13385772.178895/301‑1 (MQ=60)
                                                                                                                                                                                                                                                        TTCGATCAAAGCTGCAAGACCATAGGAGAGACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGGTAAGGTGCAACCTCCATACAAGGTCGAAGATAGCAAAGTGCTACATGAGTGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGTAA                                                                                                                                                                         <  SRR13385772.223679/162‑1 (MQ=60)
                                                                                                                                                                                                                                                                     ttgAGACCATAGTAGATACTAAGTGTGTGTCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCAGACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAAGCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGTCGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGATACGATAATATACGTTATATATTTTAGCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATTTGAGTCTACAGAT                     <  SRR13385772.1179391/294‑1 (MQ=60)
                                                                                                                                                                                                                                                                     TCAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCG                                                                           <  SRR13385772.689747/243‑1 (MQ=60)
                                                                                                                                                                                                                                                                      CAAGACCATAGGAGATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATTTGAGTCTACAGATTTTT                 <  SRR13385772.172984/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                    ATACTAAGTGGGTGGCTAAGGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTATGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATTTGAGTCTACAGATTTTTCTATTTATCAAACTA  <  SRR13385772.263639/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                         
CTCTTACTATCCAAACAACAAAGAAGAATCAATCTCCACAAAACTTCAAGGTGATAAAATGTACATTCATCAAGCATTTGGAAGTCATTGGTGATAAGCCCTCGTTTAACTCATTCAAAAAGCAACAAATCAAACCCTCATATGTCAACGTGGAAAGAGTTGAGAAGCTTTTGAAAGAAAGTGTAATAGCATCTAAAAAGAAAGAACTCTTAAGGGGCAAGGGTGTGAGTGCAGAGGGTCAGTTCATTTTCGATCAAATCTTCAAGACCATAGGAGATACTAAGTGGGTGGCTAAAGACATCATTATTCTTGATGACGTTAAGGTGCAACCTCCATACAAGGTCGAAGATATCAAAGTGCTACATGAGGGAAGTAACCAATCCATTACATTAATTCAAAGAATAGTGGAAAGAAGCTGGGAGCAGCTAGAACAAGACGATGGTAGGAAAGGTGGATAGATTAATTAATGACGGAAACGATAATATACGTTATATATTTTATCCGTACTTCTATAATGTCAACTATTGTTTATAAAGAGATCCATTTGAGTCTACAGATTTTTCTATTTATCAAACTA  >  BK006934/352862‑353438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑