Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTA  >  BK006934/354202‑354771
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                              
CTCATGATCGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCA                                                                                                                                                                                                                                                                                >  SRR13385772.927332/1‑300 (MQ=60)
     GATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGC                                                                                                                                                                                                                                                                          <  SRR13385772.32273/301‑1 (MQ=60)
           GAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAAT                                                                                                                                                                                                                                                                     >  SRR13385772.962194/1‑300 (MQ=60)
                    GTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCGCACTGTATAACACAGCTATAGCTACATGTTATTATATAGTATTGTTTCCAATCGATTAAATAACGGTTTTTACAATGGTTTTGTTCCTGTATTTTGTTTATTTTGTTCAAATGTCAAAATAGAGAACAC                                                                                                                                                                                                                                                            >  SRR13385772.665384/1‑300 (MQ=60)
                                                      CAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAACTGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGT                                                                                                                                                                                                                         >  SRR13385772.667379/1‑301 (MQ=60)
                                                           GCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCG                                                                                                                                                                                                                     <  SRR13385772.499443/300‑1 (MQ=60)
                                                                                             CTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTGTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGGTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCT                                                                                                                                                                                    <  SRR13385772.627728/299‑1 (MQ=60)
                                                                                                        GTGACGTGTAAGTAAACGGGGATGCTTCTTTTTGCTGCCCTTACTCACGAATCTATCAAAAAACATGTAAAGTTAACAATGTGCTCTCACTGTAGAACACAGCTATAGCTACATTTTAGTAGATAGTATTTTCTCCAATCGATTAAATAACGGGTTTTACAATGGTTTGGTTCCTGTATGTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTAGAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATAGCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAG                                                                                                                                                                       <  SRR13385772.1212593/301‑1 (MQ=60)
                                                                                                           ACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCCCGAAGCTATCAAAACACATGTAAATTTAACAATGTGCTCTCACTGTCTAACCCAGCTATTGCTACATTTTCTTATATAGTATTTTCTCCAATCGATTAACTAACGGTTTTTACATTGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAATTGGCAACATACAGACCACGGGTATACTTTCCTTTGTCTTCTTCATCAAAGTGTTTCGCCTATAAAACCTCTATGTAatttaccgaactattgacctatcgtagccc                                                                                                                                                                    >  SRR13385772.939757/1‑271 (MQ=60)
                                                                                                            CTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTC                                                                                                                                                                   >  SRR13385772.160707/1‑301 (MQ=60)
                                                                                                              TGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTC                                                                                                                                                                   <  SRR13385772.263704/299‑1 (MQ=60)
                                                                                                                             ATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACCATGTGCCCTCACTGTATAACACAGCTATAGCCACATTTTATTCTATAGTATTATATCCAATCGACTAAATAACGGTTTTCACAATGGTTTGGTTCCTGTATTTTGCTTATTCTGTTCACATGGACAAATACAGAACACAGGACTAACTTTCTTTGTCTTCTTCACCAAAGAGTATCACATCTCAAACCTCAATGTCCATTAACCAACTCTCGACCTATAGTAGCACCCTAGCGTTCGTTCAC                                                                                                                                                    >  SRR13385772.1290074/1‑299 (MQ=60)
                                                                                                                                          CTTCCCTTACTCACGAAGCTATCAAAAAACCTGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATAGCATATCAAACCTCTATGTACATTAACGAACTCTAGAACTATAGTAGACTCCTGGAGTTCGTTCCGTGTTATTCTTACGAT                                                                                                                                     >  SRR13385772.511342/1‑301 (MQ=60)
                                                                                                                                                          AGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCAT                                                                                                                     <  SRR13385772.472327/301‑1 (MQ=60)
                                                                                                                                                              ATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCACTCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAA                                                                                                                  >  SRR13385772.481864/1‑300 (MQ=60)
                                                                                                                                                               TCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAAT                                                                                                                >  SRR13385772.952411/1‑301 (MQ=60)
                                                                                                                                                                    AAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTATATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCAC                                                                                                           >  SRR13385772.1053478/1‑301 (MQ=60)
                                                                                                                                                                     AACATGTAAATTTAACAATGTGCTCGCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACA                                                                                                          <  SRR13385772.735527/301‑1 (MQ=60)
                                                                                                                                                                                                    TATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCG                                                                            >  SRR13385772.91547/1‑300 (MQ=60)
                                                                                                                                                                                                                    CTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGC                                                           >  SRR13385772.914646/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                      ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCCAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGCAATTACGTTGTGGTTAAGAATACAATGGCAT         >  SRR13385772.78806/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                      ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCAT         <  SRR13385772.157547/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                       CAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATCCAGAACACCGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTCTAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCAAAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATAAGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATC        >  SRR13385772.1114505/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                        AATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCG       >  SRR13385772.1223926/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                            GTTTGGTTCCTGTATGTTGTTTATTTTGGTCAAATGGCAAAATACAGAACACAGGTATATCTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTAGGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCTTTCAGTGTTATTCTGACGATGGGTCTCTCGTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGAGCTGGACTGAGCAGACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGT   <  SRR13385772.1291423/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                              TTGGTTCCTGTATTTTGGTTATTGTGTTCTAATGTCAAAATACAGAACACATGTATAACTTTCTTTGTCGTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACAGTAACGAACTCTCGACCTAGAGTAGCCTCCTGGCGTTCGTTCAGTGTTATGCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTGACGCTAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTA  <  SRR13385772.401127/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                              
CTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTA  >  BK006934/354202‑354771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑