Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGAAAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGA  >  BK006934/354192‑354780
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                       
AAGAAAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTACGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAACACCATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTT                                                                                                                                                                                                                                                                                                  >  SRR13385771.336147/1‑301 (MQ=60)
AAGAAAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTA                                                                                                                                                                                                                                                                                                  <  SRR13385771.1125034/301‑1 (MQ=60)
  GAAAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGACGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATT                                                                                                                                                                                                                                                                                                <  SRR13385771.1230601/301‑1 (MQ=60)
    AAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTT                                                                                                                                                                                                                                                                                              <  SRR13385771.1641673/301‑1 (MQ=60)
                 TAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCA                                                                                                                                                                                                                                                                                  >  SRR13385771.130633/1‑300 (MQ=60)
                         ACCAGGAAAATAAACAACTAAATGATAAGGAACGTATAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGACTCTTCTTTTTGCTTCTCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTCATTATATAGTCTTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAC                                                                                                                                                                                                                                                                          >  SRR13385771.535073/1‑300 (MQ=60)
                            AGGTAAATAAACAACTAAATGATAAGTAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGTTGTAGTCTCTAAGATGTTAGTGACTGGTAAGTAAACGGGGATTCTTCTTTTTGCGTCCCTTACTCACGAAGCGATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACA                                                                                                                                                                                                                                                                      <  SRR13385771.300079/301‑1 (MQ=60)
                                                 ATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCT                                                                                                                                                                                                                                                 >  SRR13385771.758943/1‑301 (MQ=60)
                                                            GTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAA                                                                                                                                                                                                                                       <  SRR13385771.1538475/300‑1 (MQ=60)
                                                                          TGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATC                                                                                                                                                                                                                        >  SRR13385771.1714739/1‑301 (MQ=60)
                                                                                  AACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTCTCGCATATCAAACCTCT                                                                                                                                                                                                                >  SRR13385771.233410/1‑301 (MQ=60)
                                                                                                GTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACG                                                                                                                                                                                                   <  SRR13385771.439970/300‑1 (MQ=60)
                                                                                                    TCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTTCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTC                                                                                                                                                                                              >  SRR13385771.715948/1‑301 (MQ=60)
                                                                                                                          TAAGTAAAAGGGGATTCTTCTTTTTGCTTCCCATACTCACGCAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTCCATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACACTGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCACAATACAGAACACAGGTATACCTTTCTTTGTCTTCTTCATCAAAGAGTATAGCATCTCCAACCTCTATGTACATTAACGAACTCTCGCACTATAGTAGCCTCATGG                                                                                                                                                                        >  SRR13385771.1213042/1‑301 (MQ=60)
                                                                                                                                                     TTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATCGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATT                                                                                                                                             >  SRR13385771.1369772/1‑301 (MQ=60)
                                                                                                                                                                         TCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATACAAT                                                                                                                         >  SRR13385771.980808/1‑301 (MQ=60)
                                                                                                                                                                           AAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTT                                                                                                                       >  SRR13385771.1451641/1‑301 (MQ=60)
                                                                                                                                                                                                         CACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAG                                                                                               <  SRR13385771.1289103/295‑1 (MQ=60)
                                                                                                                                                                                                                 AACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATTAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAA                                                                                  <  SRR13385771.942969/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                TTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTTCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTT                                  >  SRR13385771.567260/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                TTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATCAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCTAGAAATTACGTTTTGGTT                                  >  SRR13385771.804240/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                  AAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGATGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTA                                 >  SRR13385771.581291/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                   AATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAG                               <  SRR13385771.636413/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                    ATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAAATCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTA                                 >  SRR13385771.77866/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                                 CAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGCGAAATTACGTTGTGGTTAAGAATACAATGGCATC                 >  SRR13385771.1700306/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                  AATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTAGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTATCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATCGTGCGAAAGGGCTGGACTGAGCATACGTATAATTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCAGCG                >  SRR13385771.478769/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                              CCTGTATTTTGTTTATTTTGTTGAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCGTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTGCGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTA    <  SRR13385771.766110/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                TGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACGGGTATAACTTTCTTTGTCTTCTTCATCCAAGAGTATAGCATATAAAACCTCTACGTACATTAACGAACTCTCGACCTATAGTAGCCTCATGGCGTTCGTTCAGTGTTATTCTTCCGATTGGTCTAACTTTTCATAAAATTTCAAAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGACTT     >  SRR13385771.485006/1‑298 (MQ=60)
                                                                                                                                                                                                                                                                                                 GTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGA  <  SRR13385771.644365/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                       
AAGAAAGGTACTCATGATAGTGAGAACCAGGTAAATAAACAACTAAATGATAAGGAACGTGTAGCAGCTGCATGTGAGAATGAACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGA  >  BK006934/354192‑354780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑