Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC  >  BK006934/354295‑354844
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                               
CTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTGTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGGTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCT                                                                                                                                                                                                                                                             <  SRR13385772.627728/299‑1 (MQ=60)
           GTGACGTGTAAGTAAACGGGGATGCTTCTTTTTGCTGCCCTTACTCACGAATCTATCAAAAAACATGTAAAGTTAACAATGTGCTCTCACTGTAGAACACAGCTATAGCTACATTTTAGTAGATAGTATTTTCTCCAATCGATTAAATAACGGGTTTTACAATGGTTTGGTTCCTGTATGTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTAGAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATAGCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAG                                                                                                                                                                                                                                                <  SRR13385772.1212593/301‑1 (MQ=60)
              ACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCCCGAAGCTATCAAAACACATGTAAATTTAACAATGTGCTCTCACTGTCTAACCCAGCTATTGCTACATTTTCTTATATAGTATTTTCTCCAATCGATTAACTAACGGTTTTTACATTGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAATTGGCAACATACAGACCACGGGTATACTTTCCTTTGTCTTCTTCATCAAAGTGTTTCGCCTATAAAACCTCTATGTAatttaccgaactattgacctatcgtagccc                                                                                                                                                                                                                                             >  SRR13385772.939757/1‑271 (MQ=60)
               CTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTC                                                                                                                                                                                                                                            >  SRR13385772.160707/1‑301 (MQ=60)
                 TGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTC                                                                                                                                                                                                                                            <  SRR13385772.263704/299‑1 (MQ=60)
                                ATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACCATGTGCCCTCACTGTATAACACAGCTATAGCCACATTTTATTCTATAGTATTATATCCAATCGACTAAATAACGGTTTTCACAATGGTTTGGTTCCTGTATTTTGCTTATTCTGTTCACATGGACAAATACAGAACACAGGACTAACTTTCTTTGTCTTCTTCACCAAAGAGTATCACATCTCAAACCTCAATGTCCATTAACCAACTCTCGACCTATAGTAGCACCCTAGCGTTCGTTCAC                                                                                                                                                                                                                             >  SRR13385772.1290074/1‑299 (MQ=60)
                                             CTTCCCTTACTCACGAAGCTATCAAAAAACCTGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATAGCATATCAAACCTCTATGTACATTAACGAACTCTAGAACTATAGTAGACTCCTGGAGTTCGTTCCGTGTTATTCTTACGAT                                                                                                                                                                                                              >  SRR13385772.511342/1‑301 (MQ=60)
                                                             AGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCAT                                                                                                                                                                                              <  SRR13385772.472327/301‑1 (MQ=60)
                                                                 ATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCACTCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAA                                                                                                                                                                                           >  SRR13385772.481864/1‑300 (MQ=60)
                                                                  TCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAAT                                                                                                                                                                                         >  SRR13385772.952411/1‑301 (MQ=60)
                                                                       AAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTATATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCAC                                                                                                                                                                                    >  SRR13385772.1053478/1‑301 (MQ=60)
                                                                        AACATGTAAATTTAACAATGTGCTCGCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACA                                                                                                                                                                                   <  SRR13385772.735527/301‑1 (MQ=60)
                                                                                                       TATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCG                                                                                                                                                     >  SRR13385772.91547/1‑300 (MQ=60)
                                                                                                                       CTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGC                                                                                                                                    >  SRR13385772.914646/1‑301 (MQ=60)
                                                                                                                                                                         ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCCAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGCAATTACGTTGTGGTTAAGAATACAATGGCAT                                                                                  >  SRR13385772.78806/1‑301 (MQ=60)
                                                                                                                                                                         ACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCAT                                                                                  <  SRR13385772.157547/301‑1 (MQ=60)
                                                                                                                                                                          CAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATCCAGAACACCGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTCTAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCAAAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATAAGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATC                                                                                 >  SRR13385772.1114505/1‑301 (MQ=60)
                                                                                                                                                                           AATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCG                                                                                >  SRR13385772.1223926/1‑301 (MQ=60)
                                                                                                                                                                               GTTTGGTTCCTGTATGTTGTTTATTTTGGTCAAATGGCAAAATACAGAACACAGGTATATCTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTAGGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCTTTCAGTGTTATTCTGACGATGGGTCTCTCGTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGAGCTGGACTGAGCAGACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGT                                                                            <  SRR13385772.1291423/301‑1 (MQ=60)
                                                                                                                                                                                 TTGGTTCCTGTATTTTGGTTATTGTGTTCTAATGTCAAAATACAGAACACATGTATAACTTTCTTTGTCGTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACAGTAACGAACTCTCGACCTAGAGTAGCCTCCTGGCGTTCGTTCAGTGTTATGCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTGACGCTAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTA                                                                           <  SRR13385772.401127/300‑1 (MQ=60)
                                                                                                                                                                                                    TATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTT                                                                                                                                                                                                                                    >  SRR13385772.147642/1‑128 (MQ=60)
                                                                                                                                                                                                       TTTGTTCAAATGGAAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTT                                                                                                                                                                                                 <  SRR13385772.592961/160‑1 (MQ=60)
                                                                                                                                                                                                                   GCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTA                                         >  SRR13385772.505422/1‑300 (MQ=60)
                                                                                                                                                                                                                                  CAGGTATAACTTTCTTTGTCTTCTTCATCAAAGCGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCAaccgctcaaggttccttacgagcaaacccatatatgctctacagctaaacat                                                                                                                                           >  SRR13385772.482277/1‑135 (MQ=60)
                                                                                                                                                                                                                                            TTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCC               >  SRR13385772.480124/1‑301 (MQ=60)
                                                                                                                                                                                                                                               CTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGCATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAACAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGG             >  SRR13385772.1260883/1‑300 (MQ=60)
                                                                                                                                                                                                                                                 TTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATT          >  SRR13385772.1022405/1‑301 (MQ=60)
                                                                                                                                                                                                                                                         TTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGCAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC  >  SRR13385772.119800/1‑301 (MQ=60)
                                                                                                                                                                                                                                                          TCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC  <  SRR13385772.1273805/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                               
CTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATC  >  BK006934/354295‑354844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑