Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTA  >  BK006934/354274‑354853
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                        
AACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTCTCGCATATCAAACCTCT                                                                                                                                                                                                                                                                                         >  SRR13385771.233410/1‑301 (MQ=60)
              GTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACG                                                                                                                                                                                                                                                                            <  SRR13385771.439970/300‑1 (MQ=60)
                  TCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTTCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTC                                                                                                                                                                                                                                                                       >  SRR13385771.715948/1‑301 (MQ=60)
                                        TAAGTAAAAGGGGATTCTTCTTTTTGCTTCCCATACTCACGCAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTCCATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACACTGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCACAATACAGAACACAGGTATACCTTTCTTTGTCTTCTTCATCAAAGAGTATAGCATCTCCAACCTCTATGTACATTAACGAACTCTCGCACTATAGTAGCCTCATGG                                                                                                                                                                                                                                                 >  SRR13385771.1213042/1‑301 (MQ=60)
                                                                   TTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATCGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATT                                                                                                                                                                                                                      >  SRR13385771.1369772/1‑301 (MQ=60)
                                                                                       TCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATACAAT                                                                                                                                                                                                  >  SRR13385771.980808/1‑301 (MQ=60)
                                                                                         AAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTT                                                                                                                                                                                                >  SRR13385771.1451641/1‑301 (MQ=60)
                                                                                                                       CACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAG                                                                                                                                                                        <  SRR13385771.1289103/295‑1 (MQ=60)
                                                                                                                               AACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATTAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAA                                                                                                                                                           <  SRR13385771.942969/300‑1 (MQ=60)
                                                                                                                                                                              TTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTTCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTT                                                                                                           >  SRR13385771.567260/1‑301 (MQ=60)
                                                                                                                                                                              TTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATCAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCTAGAAATTACGTTTTGGTT                                                                                                           >  SRR13385771.804240/1‑301 (MQ=60)
                                                                                                                                                                                AAATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGATGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTA                                                                                                          >  SRR13385771.581291/1‑300 (MQ=60)
                                                                                                                                                                                 AATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAG                                                                                                        <  SRR13385771.636413/301‑1 (MQ=60)
                                                                                                                                                                                  ATAACGGTTTTTACAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAAATCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTA                                                                                                          >  SRR13385771.77866/1‑298 (MQ=60)
                                                                                                                                                                                               CAATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGCGAAATTACGTTGTGGTTAAGAATACAATGGCATC                                                                                          >  SRR13385771.1700306/1‑301 (MQ=60)
                                                                                                                                                                                                AATGGTTTGGTTCCTGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTAGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTATCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATCGTGCGAAAGGGCTGGACTGAGCATACGTATAATTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCAGCG                                                                                         >  SRR13385771.478769/1‑301 (MQ=60)
                                                                                                                                                                                                            CCTGTATTTTGTTTATTTTGTTGAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCGTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTGCGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTA                                                                             <  SRR13385771.766110/301‑1 (MQ=60)
                                                                                                                                                                                                              TGTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACGGGTATAACTTTCTTTGTCTTCTTCATCCAAGAGTATAGCATATAAAACCTCTACGTACATTAACGAACTCTCGACCTATAGTAGCCTCATGGCGTTCGTTCAGTGTTATTCTTCCGATTGGTCTAACTTTTCATAAAATTTCAAAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGACTT                                                                              >  SRR13385771.485006/1‑298 (MQ=60)
                                                                                                                                                                                                               GTATTTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGA                                                                           <  SRR13385771.644365/300‑1 (MQ=60)
                                                                                                                                                                                                                     TGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCATGGCGTTAGTCCAGTGTTATTCTTACGATTGGTATCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGAGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTA                                                                     >  SRR13385771.823576/1‑300 (MQ=60)
                                                                                                                                                                                                                       TTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTTGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGA                                                                   >  SRR13385771.1822290/1‑300 (MQ=60)
                                                                                                                                                                                                                       TTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGA                                                                   >  SRR13385771.1368843/1‑300 (MQ=60)
                                                                                                                                                                                                                            TTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTAAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAG                                                              <  SRR13385771.649953/300‑1 (MQ=60)
                                                                                                                                                                                                                             TTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCGTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATGAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGA                                                             <  SRR13385771.1293627/300‑1 (MQ=60)
                                                                                                                                                                                                                                 TCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAA                                                         <  SRR13385771.876109/300‑1 (MQ=60)
                                                                                                                                                                                                                                             ATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCCTCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTAT                                            <  SRR13385771.196456/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                             CTTCATCAAAGAGTATCGCATATCAAACATCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGCAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGACTCAGAAAAACAAGCTCAGGTATAAAATGGGATATTTTGTTCCGGATTCACATAT            >  SRR13385771.702167/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                    AAAGAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTTTAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAAT     <  SRR13385771.422712/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                       GAGTATCGCATATCAAACCTCTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTGCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGTTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTA  <  SRR13385771.1238429/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                        
AACAACTGTTGGGTGTAGTCTCTAAGATGTTAGTGACTTGTAAGTAAACGGGGATTCTTCTTTTTGCTTCCCTTACTCACGAAGCTATCAAAAAACATGTAAATTTAACAATGTGCTCTCACTGTATAACACAGCTATAGCTACATTTTATTATATAGTATTTTCTCCAATCGATTAAATAACGGTTTTTACAATGGTTTGGTTCCTGTATCTTGTTTATTTTGTTCAAATGGCAAAATACAGAACACAGGTATAACTTTCTTTGTCTTCTTCATCAAAGAGTATCGCATATCAAACCTTTATGTACATTAACGAACTCTCGACCTATAGTAGCCTCCTGGCGTTCGTTCAGTGTTATTCTTACGATTGGTCTCACTTTTCATAAAATTTCACAAGCTTCCATATTTACGCGAGGAATTGTGCGAAAGGGCTGGACTGAGCATACGTATATTTGTCGAGAAATTACGTTGTGGCTAAGAATACAATGGCATCGTAGTAGGAATTAGAAGTGTAGAATAAGAAAAACAAGCTAAGGTATAAAATGGGATATTTTGTTCCGGATTCACATATCGAAAATCTA  >  BK006934/354274‑354853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑