Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTG  >  BK006934/355374‑355963
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    
TTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAA                                                                                                                                                                                                                                                                                                    <  SRR13385772.399307/300‑1 (MQ=60)
   AGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGAGACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTG                                                                                                                                                                                                                                                                                                <  SRR13385772.866748/301‑1 (MQ=60)
                                                                    CATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACT                                                                                                                                                                                                                                >  SRR13385772.641380/1‑300 (MQ=60)
                                                                             TGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGAT                                                                                                                                                                                                                       >  SRR13385772.281431/1‑300 (MQ=60)
                                                                                                  GACAGGTATATACTGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAGCAGCACTTCTTCGGCCAACTATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTC                                                                                                                                                                                                 <  SRR13385772.24936/301‑1 (MQ=60)
                                                                                                                                  ATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTG                                                                                                                                                                                                                                                                                    <  SRR13385772.628560/186‑1 (MQ=60)
                                                                                                                                             TTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTC                                                                                                                                                       <  SRR13385772.519229/300‑1 (MQ=60)
                                                                                                                                                    TTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAAT                                                                                                                                               >  SRR13385772.196731/1‑301 (MQ=60)
                                                                                                                                                                                       CTAGATATTGTTTTTTCCATAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTG                                                                                                                                                                                                                                                                      <  SRR13385772.523667/147‑1 (MQ=60)
                                                                                                                                                                                          GATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCTAGAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTGAGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTGTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGGTTGCCATTTAACTAAGCAGAGCTTTCCCATGT                                                                                                         <  SRR13385772.780059/301‑1 (MQ=60)
                                                                                                                                                                                                          TAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCT                                                                                                                                                                                                                                                               >  SRR13385772.165135/1‑135 (MQ=60)
                                                                                                                                                                                                                TTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCC                                                                                   >  SRR13385772.276469/1‑301 (MQ=60)
                                                                                                                                                                                                                                             GCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCAAGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATAT                                                      <  SRR13385772.280648/301‑1 (MQ=60)
                                                                                                                                                                                                                                                    GAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGAAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTCTTATGCAAGCATCGCTTTACTAGTGTGGATACAAAAAAGCTTTATTACACTCTCTTTCATCCTTTCAGTTGGTTTAACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGAAGAGCTTTACCATGTTCAATGCACACATGTTACTTCATTTGTGCCAGATAGTATTGTACAAAATATGTATATC                                               >  SRR13385772.1241880/1‑301 (MQ=60)
                                                                                                                                                                                                                                                             ATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGG                                      <  SRR13385772.674832/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     TATAGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCAGCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCTGCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAG                               <  SRR13385772.959403/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                        AGAAACAGCACTTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTA                           <  SRR13385772.1235978/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                CACTTCTTCGGCCAACAATATCACGAACATTGAGCAAGATAGTGCTATAAAAGGACAGTTGCCCTTTTTTCCCTATTATGCAAGCATCGCTATACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCACCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGCAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCACATGTTCAATGCACCCATGTTAATTCCCTTGTCCCAGATAGAATTGTACAAAATCTGACTATCCCTTTCGGGCACTGAGTCTAATAAAATC                   >  SRR13385772.77910/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                   TTCTTCGGCCAACAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTGTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTAGTGTACAAAATATGTCTATCCCTTTGGGTAATGGAGTCTAATAAAATCGTC                >  SRR13385772.212072/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                               CAATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCT    <  SRR13385772.166239/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                 ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTTGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTG  >  SRR13385772.816116/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                 ATATCACGAAAATTGAGCAAGATAGTGCTATAAAAGGTCTGTTGCCCTTTTTTGCCTATTATGCAAGCATCGCTTTACTAGTGTGGATACAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTACTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCACTTTGGGGAATTGAGTCTAATCAAATCGTCTTTGCCCTATCTTG  >  SRR13385772.846326/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    
TTAAGTACTTGGGAAGAGTACCATACACACACATTATACTTAAGTGAGTTTTCTGGACCCGTGGAAGGCATCCTGATTGTTTGCGTTTCATTGATACTGACAGGTATATACGGAAAACAGGTAATCTGGCATACCTACTTATTTACAATTACAGTTGGTGATAAGGTAATTGATGTAGACACTCTAGATATTGTTTTTTCCCTAGCTGTTTTCGGTTTGGTTATGAACGCATTGTCTGCGAAAAGAAACGTGGATAAGTATTATAGAAACAGCACTTCTTCGGCCAACAATATCACGCAAATTGAGCAAGATAGTGCTATAAAAGGTCTTTTGCCCTTTTTTGCCTATTATGCAAGCATTGCTTTACTAGTGTGGATGCAACCAAGCTTTATTACACTCTCTTTCATCCTTTCCGTTGGTTTCACGGGAGCATTTACCGTCGGAAGAATAATCGTTTGCCATTTAACTAAGCAGAGCTTTCCCATGTTCAATGCACCCATGTTAATTCCTTTGTGCCAGATAGTATTGTACAAAATATGTCTATCCCTTTGGGGAATTGAGTCTAATAAAATCGTCTTTGCCCTATCTTG  >  BK006934/355374‑355963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑