Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
6054 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACC > BK006934/357403‑357987
|
AGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGACGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAAAAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGAGGCACT > SRR13385772.923729/1‑300 (MQ=60)
GATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACT > SRR13385772.875226/1‑301 (MQ=60)
AATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCA < SRR13385772.1202122/259‑1 (MQ=60)
CTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGCACGTTGCATAAATGCAAGACCTTCGAAAAGGCAATCTAAAGTGGCACTAGCTCCACCGAACCCTGGTGCCTCCATCTCGCCTATCAAATCTCG > SRR13385772.478308/1‑301 (MQ=60)
GAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTCGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCA < SRR13385772.15142/301‑1 (MQ=60)
TTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAAT < SRR13385772.1105011/300‑1 (MQ=60)
GTGTATTTGCAAGAAATGAAACCGCCTCCTCTTATTAGTAGAGGAAGATCACCTTCTACCTATGCGTCATCTCAGCGAATAACTGTGAGACCACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGT < SRR13385772.1042748/301‑1 (MQ=60)
CAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGC > SRR13385772.882636/1‑301 (MQ=60)
AAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAAGGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGT < SRR13385772.1097344/206‑1 (MQ=60)
AGAAATGAATACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCA < SRR13385772.1069988/301‑1 (MQ=60)
ATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCGTCAGGCCAAAT > SRR13385772.761468/1‑300 (MQ=60)
ATTATTAGAGGAAGAGCACCTTCTAACGATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTG < SRR13385772.722546/301‑1 (MQ=60)
GAGAGTAAGATCACCGTCGAACTATGCGTCATCGCAGCGAATGACGGTGAGAACACCGTCGAGTGTCAATTCCGCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGGTAAATGAAAGGTGCATAAATGCAATACCTTCGAAGAGGCGATCCAAAGTGGCACTAGGGGCACCTAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGTCCAAATAAAAGGGTGGAGACTCTTGAACAT < SRR13385772.145609/301‑1 (MQ=60)
gtgacgggagttcatacgggtgctcttccgatcGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACATCACAAAAAGAAAAATGCCAGCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAAGCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAAGAAAATGGTGGAGACTCTTGAACATATCCAGAACAAAC < SRR13385772.985070/268‑1 (MQ=60)
TATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACATCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAATGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTT > SRR13385772.310337/1‑301 (MQ=60)
ACTGTGAGAACACCTTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGTGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATT < SRR13385772.931200/301‑1 (MQ=60)
CACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAG < SRR13385772.315633/301‑1 (MQ=60)
GAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT < SRR13385772.81398/301‑1 (MQ=60)
AAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCT‑GGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT > SRR13385772.1029049/1‑298 (MQ=60)
AAATGCCATAAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTAGAAAAGGAGATCCAAAGTGGCACTAGGTGCACCGAAATCTGGGGCATCCATCTCGACTATCAAATCTAGTCAATACACAACAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTATTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATAAATGTACAGATTCCTCTCTGAAATATACGAGTTCATCTTCACGAGGTATGGAAGAGTGTTT > SRR13385772.733071/1‑298 (MQ=60)
CAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGATGGGTGTTTAGATAAGGAGGG > SRR13385772.459484/1‑301 (MQ=60)
GCCGTTAAATGAAAGTTGCATAAATGCAAGAACTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTAT < SRR13385772.1054735/301‑1 (MQ=60)
TAAATGACAGTTGCATAAATGCAAGACCTTCGCAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAA < SRR13385772.252317/300‑1 (MQ=60)
TAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCA > SRR13385772.634973/1‑299 (MQ=60)
AAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCGTCGAAGGAAAAGGAGGATCCGTTCT < SRR13385772.56106/131‑1 (MQ=60)
AATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATA < SRR13385772.509934/301‑1 (MQ=60)
AGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGGTCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGC < SRR13385772.1140387/301‑1 (MQ=60)
CGAAAAGGCGATCAAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATACGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCG > SRR13385772.862468/1‑300 (MQ=60)
AAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAAGCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGCATGGAAGGGCGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAAC > SRR13385772.102840/1‑301 (MQ=60)
GATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACC > SRR13385772.724616/1‑301 (MQ=60)
|
AGTGGTAGATCCAGATACCTTTCATGGGGAGAATCCCGGAATTCCTTATGATGAACTGGCTTTAAAAAATGGATCAAAAGGGATGTTTGTGTATTTGCAAGAAATGAAAACGCCTCCTCTTATTATTAGAGGAAGATCACCTTCTAACTATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACC > BK006934/357403‑357987
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |