Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATATTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCT  >  BK006934/357551‑358113
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           
TATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACATCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAATGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTT                                                                                                                                                                                                                                                                        >  SRR13385772.310337/1‑301 (MQ=60)
                     ACTGTGAGAACACCTTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGTGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATT                                                                                                                                                                                                                                                   <  SRR13385772.931200/301‑1 (MQ=60)
                                                    CACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAG                                                                                                                                                                                                                    <  SRR13385772.315633/301‑1 (MQ=60)
                                                                      GAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT                                                                                                                                                                                                  <  SRR13385772.81398/301‑1 (MQ=60)
                                                                        AAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCT‑GGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTT                                                                                                                                                                                                  >  SRR13385772.1029049/1‑298 (MQ=60)
                                                                         AAATGCCATAAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTAGAAAAGGAGATCCAAAGTGGCACTAGGTGCACCGAAATCTGGGGCATCCATCTCGACTATCAAATCTAGTCAATACACAACAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTATTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATAAATGTACAGATTCCTCTCTGAAATATACGAGTTCATCTTCACGAGGTATGGAAGAGTGTTT                                                                                                                                                                                                  >  SRR13385772.733071/1‑298 (MQ=60)
                                                                                  CAATGGCGCAGCCGTTAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGATGGGTGTTTAGATAAGGAGGG                                                                                                                                                                                      >  SRR13385772.459484/1‑301 (MQ=60)
                                                                                            GCCGTTAAATGAAAGTTGCATAAATGCAAGAACTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTAT                                                                                                                                                                            <  SRR13385772.1054735/301‑1 (MQ=60)
                                                                                                 TAAATGACAGTTGCATAAATGCAAGACCTTCGCAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAA                                                                                                                                                                        <  SRR13385772.252317/300‑1 (MQ=60)
                                                                                                 TAAATGAAAGTTGCATAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCA                                                                                                                                                                         >  SRR13385772.634973/1‑299 (MQ=60)
                                                                                                                  AATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATA                                                                                                                                                      <  SRR13385772.509934/301‑1 (MQ=60)
                                                                                                                        AGACCTTCGAAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGGTCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGC                                                                                                                                                <  SRR13385772.1140387/301‑1 (MQ=60)
                                                                                                                          atacgagctcgtttcacgtgactggagttcagcgtgtgctcttccgatctCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAA                                                                                                                                              <  SRR13385772.579563/251‑1 (MQ=60)
                                                                                                                               CGAAAAGGCGATCAAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATACGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCG                                                                                                                                          >  SRR13385772.862468/1‑300 (MQ=60)
                                                                                                                                 AAAAGGCGATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAAGCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGCATGGAAGGGCGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAAC                                                                                                                                       >  SRR13385772.102840/1‑301 (MQ=60)
                                                                                                                                        GATCCAAAGTGGCACTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACC                                                                                                                                >  SRR13385772.724616/1‑301 (MQ=60)
                                                                                                                                                                        GGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTACTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCA                                                                                                <  SRR13385772.627110/301‑1 (MQ=60)
                                                                                                                                                                                  CCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGGTCTTCATGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTGCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAATCAAATCGAACGGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTC                                                                                      <  SRR13385772.988978/301‑1 (MQ=60)
                                                                                                                                                                                        CTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGCCTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAACGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGACGCACATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTT                                                                                                  >  SRR13385772.1212412/1‑283 (MQ=60)
                                                                                                                                                                                                 CTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAA                                                                        >  SRR13385772.520439/1‑300 (MQ=60)
                                                                                                                                                                                                   CGTCAATCCACACCAATGGGAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAA                                                                         <  SRR13385772.388115/297‑1 (MQ=60)
                                                                                                                                                                                                             CACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGATCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATT                                                           <  SRR13385772.242288/301‑1 (MQ=60)
                                                                                                                                                                                                                        GCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAA                                                <  SRR13385772.528267/301‑1 (MQ=60)
                                                                                                                                                                                                                              AAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATG                                          <  SRR13385772.330632/301‑1 (MQ=60)
                                                                                                                                                                                                                                    AATGAGGATACGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCCCTGAAATATCCGAGTTCATCTTCAAGCGGTATGCAAGGGTGTTTAGAAAAGGAGGACTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTAAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATA                                     >  SRR13385772.227270/1‑300 (MQ=60)
                                                                                                                                                                                                                                         GGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGACACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTAT                                           >  SRR13385772.15869/1‑289 (MQ=60)
                                                                                                                                                                                                                                                  CTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAA                                                                                                                                                                                            >  SRR13385772.314381/1‑135 (MQ=60)
                                                                                                                                                                                                                                                     CAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATC                    <  SRR13385772.904415/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                             AACAAACTGGATGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTATTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATGTTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCT  <  SRR13385772.850863/278‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                           
TATGCGTCATCTCAGCGAATAACTGTGAGAACACCGTCGAGTGTCAATTCCTCACAAAACAGCACAAAAAGAAAAATGCCATCAATGGCGCAGCCGTTAAATGAAAGTTGCTTAAATGCAAGACCTTCGAAAAGGCGATCCAAAGTGGCGCTAGGTGCACCGAACTCTGGGGCCTCCATCTCGCCTATCAAATCTCGTCAATCCACACCAATGGAAGCTTCGAAGGAAAATGAGGATCCGTTCTTCAGGCCAAATAAAAGGGTGGAGACTCTTGAACATATCCAGAACAAACTGGGTGCTTTGAAAAATCAATGTCCAGATTCCTCTCTGAAATATCCGAGTTCATCTTCAAGAGGTATGGAAGGGTGTTTAGAAAAGGAGGATTTAGTTTACTCAAGTAGTTTTTCTGTTAATATGAAGCAAATCGAACTGAAACCGGCACGCTCTTTTGAACATGAGAATATTTTCAAAGTAGGCTCATTAGCATTCAAAAAAATCAATGAATTACCTCATGAAAATTATGATATAACAATAGAGAAGAAATCAATGGAACAGAATTATCT  >  BK006934/357551‑358113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑