Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6054	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCCCTTCATATCTACATAGAATAGGTTAAGTATTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGAGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAGTATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAAC  >  BK006934/358437‑358991

AGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGT                                                                                                                                                                                                                                                                <  SRR13385772.1199404/301‑1 (MQ=60)

     TAAATAAACTAATGATGTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCATATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATATAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTTGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATAC                                                                                                                                                                                                                                                            <  SRR13385772.922048/300‑1 (MQ=60)

        ATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGA                                                                                                                                                                                                                                                         >  SRR13385772.1157788/1‑300 (MQ=60)

          AAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATA                                                                                                                                                                                                                                                      <  SRR13385772.142563/301‑1 (MQ=60)

                  GATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGGACATAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAGCTGAGCTAGATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTCCATAGGATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAGTAATGAAGATTGGGTGGATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTGTACAGAATATACTAGAA                                                                                                                                                                                                                                              <  SRR13385772.1040356/301‑1 (MQ=60)

                   ATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACAACGGACCTCCAGATAACTTGAACGAAGTTTTTTCTTCAGTCTGGCGATCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAAAGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAG                                                                                                                                                                                                                                             <  SRR13385772.245454/301‑1 (MQ=60)

                                                       ATCGAACACAGGACCACCAGATAAATTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAAT                                                                                                                                                                                                         <  SRR13385772.506724/301‑1 (MQ=60)

                                                                AGGACCTCCAGATAACTTGACCGAAGGTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGGTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTC                                                                                                                                                                                                <  SRR13385772.955545/301‑1 (MQ=60)

                                                                  GACCTCCAGATAACTTGACCTAAGTTGTTTCGTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTGATCAGGTCTCTTCATATCTACATATAATAGCTTAAGTGTTTTAGTAGTTGCCAGAAGAACTACTGATAGTTTGGAATATTTGGTGAATAATGAAGATTGGGTTAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGTAGATCTTGAAGGTCACAAAAGTGAATCTATATTTCTA                                                                                                                                                                                              <  SRR13385772.1019110/301‑1 (MQ=60)

                                                                   ACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTAC                                                                                                                                                                                             <  SRR13385772.716697/301‑1 (MQ=60)

                                                                       CCAGATACCTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTCTTTGTTATCAGTTCTCTTAATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATA                                                                                                                                                                                          <  SRR13385772.287952/300‑1 (MQ=60)

                                                                                 TGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTAGTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCGCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCAT                                                                                                                                                                                <  SRR13385772.987901/300‑1 (MQ=60)

                                                                                                  TCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTT                                                                                                                                                               <  SRR13385772.273798/300‑1 (MQ=60)

                                                                                                  TCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTT                                                                                                                                                               <  SRR13385772.330605/300‑1 (MQ=60)

                                                                                                                 CCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCAT                                                                                                                                                <  SRR13385772.636003/300‑1 (MQ=60)

                                                                                                                     ACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTG                                                                                                                                           <  SRR13385772.374351/301‑1 (MQ=60)

                                                                                                                                       ACTATTTGTTATCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTttgataattgcatt                                                                                                                          >  SRR13385772.919823/1‑286 (MQ=60)

                                                                                                                                                  TCAGTTCTCTTCATATCTACATAGAATAGCTTAAGTGTTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTA                                                                                                                                                                                                                                                                           <  SRR13385772.692029/144‑1 (MQ=60)

                                                                                                                                                                                 taagtgttgtagtatTTGCCAGAAGAACTACTGATAGTTGGGAATATGTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTGTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGTAGATCTTGAATTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTA                                                                                 <  SRR13385772.764570/284‑1 (MQ=60)

                                                                                                                                                                                         TTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATCTTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTATACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCCTTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTAT                                                                       >  SRR13385772.1208102/1‑301 (MQ=60)

                                                                                                                                                                                                 TGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATT                                                               >  SRR13385772.1231986/1‑301 (MQ=60)

                                                                                                                                                                                                                       TGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATC                                         >  SRR13385772.620771/1‑301 (MQ=60)

                                                                                                                                                                                                                           AATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGACTATACTAGAAGTTCTCTTCGGA                                                                                                                                                                                                                                  >  SRR13385772.1279469/1‑112 (MQ=60)

                                                                                                                                                                                                                               TTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTACATTC                                 >  SRR13385772.1226674/1‑301 (MQ=60)

                                                                                                                                                                                                                                                    GGTGAATAATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGCATGAAAT            >  SRR13385772.1105216/1‑301 (MQ=60)

                                                                                                                                                                                                                                                            ATTTGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATACACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCAATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGCTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCATTTCGGATTCAGTACTGCATGAAATACTCGCT     >  SRR13385772.1259479/1‑300 (MQ=60)

                                                                                                                                                                                                                                                               TGATAATTTTGGGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAATATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAAC  >  SRR13385772.420769/1‑300 (MQ=60)

AGTATTAAATAAACTAATGATTTTAAATCGTTAAAAAAATATGCGAATTCTGTGGATCGAACACAGGACCTCCAGATAACTTGACCGAAGTTTTTTCTTCAGTCTGGCGCTCTCCCAACTGAGCTAAATCCGCTTACTATTTGTTATCAGTTCCCTTCATATCTACATAGAATAGGTTAAGTATTTTATTAGTTGCCAGAAGAACTACTGATAGTTGGGAATATTTGGTGAATAATGAAGATTGGGTGAATAATTTGATAATTTTGAGATTCAATTGTTAATCAATGTTACAATATTATGTATACAGAGTATACTAGAAGTTCTCTTCGGAGATCTTGAAGTTCACAAAAGGGAATCGATATTTCTACATAATATTATCATTACTTCTTCCCCATCTTATATTTGTCATTCATTATTGATTATGATCAATGCAATAATGATTGGTAGTTGCCAAACATTTAATACGATCCTCTGTAATATTTCTATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAAC  >  BK006934/358437‑358991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`