Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACGTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCGTCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACGTAAAGATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAACGCAAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAG  >  BK006934/358921‑359486
                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                           
ATGAATAGTTATCACAGCAACGTTCAATGATCTTCAATTCGGCTTCAGTACTGCATTAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGGCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTGGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTATTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAATGACTAGTAGTGT                                                                                                                                                                                                                                                                            <  SRR13385772.374864/300‑1 (MQ=60)
ATGAATAATTATCACAGCAACGTTCAATTATCGTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGT                                                                                                                                                                                                                                                                              <  SRR13385772.480676/298‑1 (MQ=60)
                        CAATTATCTTCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGT                                                                                                                                                                                                                                                    <  SRR13385772.613609/300‑1 (MQ=60)
                                 TCAATTCGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTATATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCC                                                                                                                                                                                                                                          >  SRR13385772.980767/1‑301 (MQ=60)
                                       CGGCTTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTG                                                                                                                                                                                                                                    <  SRR13385772.27039/301‑1 (MQ=60)
                                           TTCAGTACTGCATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAAT                                                                                                                                                                                                                                >  SRR13385772.1297776/1‑301 (MQ=60)
                                             CAGTACTGCATGAAATACTCGCTAACATTGTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATT                                                                                                                                                                                                                               <  SRR13385772.1266047/300‑1 (MQ=60)
                                                          AATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTAATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATCTTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCG                                                                                                                                                                                                                   >  SRR13385772.125142/1‑299 (MQ=60)
                                                                    AACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTAGAGGGTGGCTT                                                                                                                                                                                                         <  SRR13385772.676676/299‑1 (MQ=60)
                                                                           TCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTTGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATA                                                                                                                                                                                                 <  SRR13385772.735497/300‑1 (MQ=60)
                                                                               TATTCTATAATAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAACGTATCGATACCCTTTTTGGAATTATTGTATCTTCACGGGTGGCTTTTAATATATTTTT                                                                                                                                                                                            >  SRR13385772.938640/1‑301 (MQ=60)
                                                                                         AAGCACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAA                                                                                                                                                                                  <  SRR13385772.207451/301‑1 (MQ=60)
                                                                                            CACAGTGACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTT                                                                                                                                                                                                                                      <  SRR13385772.1055762/246‑1 (MQ=60)
                                                                                                  GACACTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAAC                                                                                                                                                                         >  SRR13385772.491115/1‑301 (MQ=60)
                                                                                                      CTTAAACGTCAAACTTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTT                                                                                                                                                                     >  SRR13385772.546316/1‑301 (MQ=60)
                                                                                                                      GGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCC                                                                                                                                                     >  SRR13385772.323536/1‑301 (MQ=60)
                                                                                                                       GCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTAACAACAACGAAATCAC                                                                                                                                                    >  SRR13385772.623607/1‑301 (MQ=60)
                                                                                                                                            ATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTCGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGCTGTGTAATAATTTT                                                                                                                                >  SRR13385772.200187/1‑300 (MQ=60)
                                                                                                                                                                        AGGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATC                                                                                                   >  SRR13385772.171422/1‑301 (MQ=60)
                                                                                                                                                                         GGAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCC                                                                                                  <  SRR13385772.215301/301‑1 (MQ=60)
                                                                                                                                                                          GAACATCATCATCCATCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCT                                                                                                 <  SRR13385772.233936/301‑1 (MQ=60)
                                                                                                                                                                                                                     TATCACATGGTGTGTAAGAACATTACATAAAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTCTTGCTTTACCAATCCTTTTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGAC                                                      >  SRR13385772.992670/1‑301 (MQ=60)
                                                                                                                                                                                                                                                  AAAATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTGTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGAT                         <  SRR13385772.1226663/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                GTCATCAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGT           >  SRR13385772.580729/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                     CAAAAATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGG               <  SRR13385772.687611/292‑1 (MQ=60)
                                                                                                                                                                                                                                                                         AATAAAGGAAGCTGAAATGCAAGGACTAGTAGTGTAATATAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAG  <  SRR13385772.654413/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                           
ATGAATAATTATCACAGCAACGTTCAATTATCTTCAATTCGGCTTCAGTACTGTATGAAATACTCGCTAACATTTTCTTTATTCTATAATAGCACAGTGACACTTAAACGTCAAACGTGGCGCACATTAATATACGATGTATGCATTTGGCTTGACACTGCTGTAATAAGGAACATCATCATCCGTCAACTAGTAGTCACATTAGTAGTGTATTATCACATGGTGTGTAAGAACATTACGTAAAGATTGAAAAAAAGTCATCAAAAATAAAGGAAGCTGAAACGCAAGGACTAGTAGTGTAATAGAATAATATTGTGTAAAAGTATCGATACCCTTTTTGGAATTATTGTATCTTCGAGGGTGGCTTTTAATATATTTTTGAAAACCTAATATTATAACCTTTCACAACAACGAAATCCCAACTGTTGTGTAATAATTTTACTCAATTCTTACTATTGCTTTACCAATCCTTGTATTTGAGCTCTCATAAAGTTCGCTGACTACTTCTCACGACTCATGTCATCTCCTTATACTGTATATGATAATATACTGGTGGTGAATGACAG  >  BK006934/358921‑359486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑