Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAAGAAAAATGTTCAAAGTAAACGCTTAATAGACAGAGTGGTTCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGACTGGGGCAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAAGAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGAT  >  BK006934/360935‑361501
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                 
CCAAGAAAAATGTTCAAAGTAAACGCTTAAAAGACAGGGTGGTTCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTG                                                                                                                                                                                                                                                                            <  SRR13385772.174728/301‑1 (MQ=60)
                      CCGCTTATTAGACAGAGTGGTTCCCATGGACAGGATTAAAAAAGTTGGCGAAGCGAAAAAAAAAACCGTAGAGCACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGC                                                                                                                                                                                                                                                      <  SRR13385772.1238216/301‑1 (MQ=60)
                                 ACAGAGTGGTTCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGAAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAAGGC                                                                                                                                                                                                                                           >  SRR13385772.456600/1‑301 (MQ=60)
                                           TCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACCCACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGAAGTCGGTGTACTGTTAAGAGAAGCACAGGGTGATATCGCTAAAAGAACTAATGTTTCCCAAAGACATAGGAAACAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAAAGGCATGACCAGGGCCAATAACTCC                                                                                                                                                                                                                                 >  SRR13385772.769093/1‑301 (MQ=60)
                                                TGGACAAGATTAAAAAAGTTGGCGTAGCG‑AAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAAT                                                                                                                                                                                                                           >  SRR13385772.26979/1‑301 (MQ=60)
                                                    CAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATT                                                                                                                                                                                                                          <  SRR13385772.722764/299‑1 (MQ=60)
                                                                   GGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAA                                                                                                                                                                                                         <  SRR13385772.53047/301‑1 (MQ=60)
                                                                                      ACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTG                                                                                                                                                                                      >  SRR13385772.88021/1‑301 (MQ=60)
                                                                                                                         CAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAACGACATCAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTttcctccctctttttat                                                                                                                                                    <  SRR13385772.618819/300‑18 (MQ=60)
                                                                                                                         CAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATT                                                                                                                                                   >  SRR13385772.121518/1‑301 (MQ=60)
                                                                                                                                                         GTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTT                                                                                                                   <  SRR13385772.1172644/301‑1 (MQ=60)
                                                                                                                                                                    AGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTC                                                                                                         >  SRR13385772.737282/1‑300 (MQ=60)
                                                                                                                                                                              AGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCAAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGAGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTT                                                                                              >  SRR13385772.833818/1‑301 (MQ=60)
                                                                                                                                                                                           TAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCA                                                                                  >  SRR13385772.207117/1‑300 (MQ=60)
                                                                                                                                                                                             AAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGA                                                                               <  SRR13385772.1000166/301‑1 (MQ=60)
                                                                                                                                                                                               AGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAAGAAAGAAGAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGTCATGAACAGTGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTTCAGCGACAACATTTTGTCGAAGAAATACAAGGTGGCAGCCAGCTTGGGATATCTACAAATTCACATGCTTCAGATAAATTGTTAATGCTATTCAACCGAACTTTGGGAGTAAACCAAGAA                                                                              >  SRR13385772.142991/1‑300 (MQ=60)
                                                                                                                                                                                                              CAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTACACCAAGAAAACTTGAAACATGTTC                                                              >  SRR13385772.43616/1‑301 (MQ=60)
                                                                                                                                                                                                                                                GGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAAAAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTAACAATTCAGCTGCTTCAGATAAATTGTTAATGCTATTCAAACTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGAAGATAGATCAAAT                            >  SRR13385772.1018841/1‑301 (MQ=60)
                                                                                                                                                                                                                                                 GCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATT                           <  SRR13385772.33234/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                  ACAGCAGTCCGGGCTGGGGGAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCAGGAACATGGCCAATAACTCTCGGAATTTGACCACTAATATTAAATTGCAGCGACAACATTGTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTGGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCC          <  SRR13385772.43490/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                   CAGCAGTACTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCT                                                                                                    <  SRR13385772.1133021/210‑1 (MQ=60)
                                                                                                                                                                                                                                                                          CCTGGCTGGTGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATTAACATGGCCAATAACTCTCTGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATGTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGAT  <  SRR13385772.701558/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                 GGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGACATCTACAAATTCAGATGCTTCAGATAAATT                                                                                                                      <  SRR13385772.476021/178‑1 (MQ=60)
                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                 
CCAAGAAAAATGTTCAAAGTAAACGCTTAATAGACAGAGTGGTTCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGACTGGGGCAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAAGAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGAT  >  BK006934/360935‑361501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑