Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGACTGGGGCAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAAGAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGATCTGCCACCGCTAAGGTCCGTCTGGCAT  >  BK006934/360978‑361528
                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                
TCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACCCACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGAAGTCGGTGTACTGTTAAGAGAAGCACAGGGTGATATCGCTAAAAGAACTAATGTTTCCCAAAGACATAGGAAACAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAAAGGCATGACCAGGGCCAATAACTCC                                                                                                                                                                                                                                                            >  SRR13385772.769093/1‑301 (MQ=60)
     TGGACAAGATTAAAAAAGTTGGCGTAGCG‑AAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAAT                                                                                                                                                                                                                                                      >  SRR13385772.26979/1‑301 (MQ=60)
         CAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATT                                                                                                                                                                                                                                                     <  SRR13385772.722764/299‑1 (MQ=60)
                        GGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAA                                                                                                                                                                                                                                    <  SRR13385772.53047/301‑1 (MQ=60)
                                           ACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTG                                                                                                                                                                                                                 >  SRR13385772.88021/1‑301 (MQ=60)
                                                                              CAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAACGACATCAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTttcctccctctttttat                                                                                                                                                                               <  SRR13385772.618819/300‑18 (MQ=60)
                                                                              CAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATT                                                                                                                                                                              >  SRR13385772.121518/1‑301 (MQ=60)
                                                                                                              GTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTT                                                                                                                                              <  SRR13385772.1172644/301‑1 (MQ=60)
                                                                                                                         AGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTC                                                                                                                                    >  SRR13385772.737282/1‑300 (MQ=60)
                                                                                                                                   AGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCAAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGAGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTT                                                                                                                         >  SRR13385772.833818/1‑301 (MQ=60)
                                                                                                                                                TAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCA                                                                                                             >  SRR13385772.207117/1‑300 (MQ=60)
                                                                                                                                                  AAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGA                                                                                                          <  SRR13385772.1000166/301‑1 (MQ=60)
                                                                                                                                                    AGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAAGAAAGAAGAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGTCATGAACAGTGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTTCAGCGACAACATTTTGTCGAAGAAATACAAGGTGGCAGCCAGCTTGGGATATCTACAAATTCACATGCTTCAGATAAATTGTTAATGCTATTCAACCGAACTTTGGGAGTAAACCAAGAA                                                                                                         >  SRR13385772.142991/1‑300 (MQ=60)
                                                                                                                                                                   CAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTACACCAAGAAAACTTGAAACATGTTC                                                                                         >  SRR13385772.43616/1‑301 (MQ=60)
                                                                                                                                                                                                     GGCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAAAAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTAACAATTCAGCTGCTTCAGATAAATTGTTAATGCTATTCAAACTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGAAGATAGATCAAAT                                                       >  SRR13385772.1018841/1‑301 (MQ=60)
                                                                                                                                                                                                      GCCCCACAAAGACATAAACAGCAGTCCTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATT                                                      <  SRR13385772.33234/301‑1 (MQ=60)
                                                                                                                                                                                                                       ACAGCAGTCCGGGCTGGGGGAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCAGGAACATGGCCAATAACTCTCGGAATTTGACCACTAATATTAAATTGCAGCGACAACATTGTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTGGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCC                                     <  SRR13385772.43490/301‑1 (MQ=60)
                                                                                                                                                                                                                        CAGCAGTACTGGCTGGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCT                                                                                                                               <  SRR13385772.1133021/210‑1 (MQ=60)
                                                                                                                                                                                                                               CCTGGCTGGTGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATTAACATGGCCAATAACTCTCTGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATGTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGAT                             <  SRR13385772.701558/301‑1 (MQ=60)
                                                                                                                                                                                                                                      GGGGTAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGACATCTACAAATTCAGATGCTTCAGATAAATT                                                                                                                                                 <  SRR13385772.476021/178‑1 (MQ=60)
                                                                                                                                                                                                                                              GCCCACAGAGAAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATGAATTGTTAATGCTATTCAACCTAACTTTGGGAGGAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGATCTGCCACCGCTAAG               <  SRR13385772.247571/300‑1 (MQ=60)
                                                                                                                                                                                                                                                          ACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGATCTGCCACCGCTAAGGTCCGTCTGGCAT  <  SRR13385772.244919/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     GAGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTA                                                     >  SRR13385772.367494/1‑239 (MQ=60)
                                                                                                                                                                                                                                                                      AGCGAAAAAGCAAACGGCATGAACAGGGCCAATAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTC                                                                            <  SRR13385772.462120/215‑1 (MQ=60)
                                                                                                                                                                                                                                                                             AAGCAAACTGCATGAACAGGGCCAATAACGCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGAGGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAG                                                    <  SRR13385772.889912/232‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                
TCCCATGGACAAGATTAAAAAAGTTGGCGTAGCGAAAAAAAAAACCGTAGAACACACTAAAGAAGGATTTAGCGTTGTCAACGGTAAGCTAGTAAGCAGCAATGACGTCGGTGTACTGTTAAGAGAAGCACAGGGTGCTATCGATAAAAGAACTAATGTTTCCCAAAGAAATAGGAAAAAGGGAATAAAGAATAATAGGCCCCACAAAGACATAAACAGCAGTCCTGACTGGGGCAATGCCCACAGAGGAACCGATTGGCAGAGCGAAAAAGCAAACGGCATGAACAGGGCCAAGAACTCTCGGAATTTTACCACTAATATTAAATTGCAGCGACAACATTTTGGCGAAGAAATACAAGGTGGCAGCCAGCTTGTGATATCTACAAATTCAGATGCTTCAGATAAATTGTTAATGCTATTCAACCTAACTTTGGGAGTAAACCAAGAAAACTTGAAAAATGTTCTGGAAAACATTTCTCAGGTGCAGATAGCTCAAATTAGGGTTAGAGACCTGCCTTCAGGATCTGCCACCGCTAAGGTCCGTCTGGCAT  >  BK006934/360978‑361528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑