Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAACGACACTCACAAGGTATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑ATTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAACAAACCAATTGCTGGG  >  BK006934/361652‑362173
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                       
CAACGACACTCACAAGGTATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACCGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCCCTTCTTCTTTCAAAGCTGCCTCAAAA                                                                                                                                                                                                                                >  SRR13385772.220188/1‑300 (MQ=60)
CAACGACACTCACAAGGTATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGTTGCCTTAAAA                                                                                                                                                                                                                                >  SRR13385772.25004/1‑300 (MQ=60)
  ACGACACTCACAAGGTATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAG                                                                                                                                                                                                                               >  SRR13385772.219296/1‑299 (MQ=60)
                  ATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTC‑AA‑ATTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAA                                                                                                                                                                                                             <  SRR13385772.241400/300‑1 (MQ=60)
                    TTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTGCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAG                                                                                                                                                                                                            <  SRR13385772.260205/300‑1 (MQ=60)
                                      GCCACCAACTATTTTTTTGAAGACCTGCAATCTCATGACTGCATAATAAAAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTAATAAACTATAAAGCAGGTCCTTACAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATAGCATAAAAAATCGACAGTTGTAATAATCTCCGGCGCACTTTTCCCTTTCCGTCTTTTTTTCCAAC‑TATTTTTTTTTTTTAACTTCTTCTTTAAAAACTGCCTCAAAAGCAACATATATATTGGTAAGAcaacacttcccaaacta                                                                                                                                                                                          >  SRR13385772.1018901/1‑283 (MQ=60)
                                                     TTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTC‑AA‑ATTTTTTTTTTTTTCCCTTCTTCTTTCAAAGCTCCCTCAAAAGAGATATATATATTGTTACGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTA                                                                                                                                                                          >  SRR13385772.1138394/1‑300 (MQ=60)
                                                      TTGAAGACATTCTTTCTGATGTCTGCCTAATAACAATACCTCATTCTACTACTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAATGCCGGTTTTTCTATAAGCTTATCTCATCTCATAAAAAATCGATAGTTTTAATTATCGCCGTCGGACTTTTCCCTGTCCGTCTTTTTTGTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCGCAAAAGAGATATATATATTTGTAAGAATCCTCTGCCAATACTAGCTTCATTTCTTCTTG                                                                                                                                                                          <  SRR13385772.1087501/300‑1 (MQ=60)
                                                                       CATGACTGCCTAATAACAATACCTCAGTCTACTAGTAATCGACCTAGGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTAGCTCATCGCATAAAAAATCGACAGTTGGAATTATCTCCGGGGGACTTTGCCCGTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATGTCTTCTTGAACCATGAACCCGTTA                                                                                                                                                          <  SRR13385772.255503/299‑1 (MQ=60)
                                                                              GCCTAAGAAAAATACCTCATTCTACTAGTAATCGACCTATTTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCTGTTTTTTTATTAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTT                                                                                                                                                  <  SRR13385772.1293897/300‑1 (MQ=60)
                                                                                               cgtgcagcaggtaaacgaccgatttaatgcgttcaaaaactagaaatcagttcctttcaagaacataaagcccgtTTTTTCTAAAAGCTTACCTCATCGCATAAAAAATCCACAGTTGTAATTATTTCCGGCGGACTTTTCCCTTCCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTG                                                                                                                                  <  SRR13385772.700599/224‑1 (MQ=60)
                                                                                                           AATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCT                                                                                                                    >  SRR13385772.317426/1‑301 (MQ=60)
                                                                                                           AATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCT                                                                                                                    >  SRR13385772.441686/1‑301 (MQ=60)
                                                                                                               GACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGACCCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATT                                                                                                                >  SRR13385772.343124/1‑301 (MQ=60)
                                                                                                                                     ACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTTTTCTTTCAAACCTGCCTCAAAATAGATATATTTTTTTGTAAGAATCTTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTTGCTTCTCCATTCTTGTCCCTTACATATCTTATATATTATCCAAACAAAGGGTCTT                                                                                          >  SRR13385772.490595/1‑301 (MQ=60)
                                                                                                                                                  CCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGTACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACC                                                                             <  SRR13385772.1036650/301‑1 (MQ=60)
                                                                                                                                                        CAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCGCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTTTACCTTACATATCTTATATATGATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAA                                                                        >  SRR13385772.920009/1‑300 (MQ=60)
                                                                                                                                                         aagaacaggtAGGCCGTTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACTGTTGTAATTATCTCCGGCGTACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAAT                                                                      <  SRR13385772.808071/291‑1 (MQ=60)
                                                                                                                                                         AATAACAGATAGGCCGGTTTTTCTATAAGCTTATATCATCGCATAAAAAATCTCCAGTTGTAATTATCTCCGGCTGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAGGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAAT                                                                      <  SRR13385772.582038/301‑1 (MQ=60)
                                                                                                                                                           TAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAATCTGCCTCAAAAGAGATATATATAGTGGTAAGAATCCTCTCCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTTTATATTATCCAAACACAGGGTCTTTCTTTATCAAACCCAGAAATCT                                                                    >  SRR13385772.178024/1‑301 (MQ=60)
                                                                                                                                                                        gttttttctataagcttttctctccggttaaaaattcgacgtttgtatttttttccgttgtACTTTTCCCTTTCCTTTTTTTTTTTCAAT‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCGTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTC                                                        <  SRR13385772.118975/239‑1 (MQ=60)
                                                                                                                                                                                  TAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAATTTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCC                                              >  SRR13385772.678570/1‑301 (MQ=60)
                                                                                                                                                                                           TTCATCTCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCGTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTATAAAGCTGCAAAAAATGTCTTCGGAACCATTTAAGAAC                                     <  SRR13385772.305748/300‑1 (MQ=60)
                                                                                                                                                                                             ccatcaATAAAAAAACGACAATTTTAATTATCTCCCGCCGAATTTTTCCTTTCCCTCTTTTTTTTCAAA‑A‑TTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACG                                    <  SRR13385772.907825/292‑1 (MQ=60)
                                                                                                                                                                                                    TTAAAAATGGACAGGGGTAATTATGTCCGGCGGGCTTTTCCCTTTCCGTCTGTTTTTTCTAA‑TTTTTTGTTTTTTTCACTGCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTATCTTCATTTCTTCTTGAACCATGAACCCGTTATTC                                                                                                                                                       <  SRR13385772.406687/177‑1 (MQ=60)
                                                                                                                                                                                                              TCAGTTGTACTTATCTCCGGCGGACTTTTCCCATTCCGTTTTTTTTTTTAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAA                  <  SRR13385772.726013/300‑1 (MQ=60)
                                                                                                                                                                                                                   TGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCCCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAAAACAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTTCTACCTCAAAACAACC            >  SRR13385772.1264600/1‑301 (MQ=60)
                                                                                                                                                                                                                   TGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTC‑AA‑ATTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAACAAACC            >  SRR13385772.678045/1‑300 (MQ=60)
                                                                                                                                                                                                                               CCGCGGCCTTTTCCCTTTCCCTCTTTTTTTTCAAA‑TTTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAACAAACCAATTGCTGGG  <  SRR13385772.296545/299‑1 (MQ=60)
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                       
CAACGACACTCACAAGGTATTTAATCAGCAAAATCCCCGCCACAAACTATTTTTTTGAAGACATGCTTTCTCATGACTGCCTAATAACAATACCTCATTCTACTAGTAATCGACCTATGTAATTATTTCATAAACTATAAAGCAGGTCATTGCAATAACAGAAAGGCCGGTTTTTCTATAAGCTTATCTCATCGCATAAAAAATCGACAGTTGTAATTATCTCCGGCGGACTTTTCCCTTTCCGTCTTTTTTTTCAAA‑ATTTTTTTTTTTTTCACTTCTTCTTTCAAAGCTGCCTCAAAAGAGATATATATATTGGTAAGAATCCTCTTCCAATACTAGCTTCATTTCTTCTTGAACCATGAACCCGTTATTCTTTTTGGCTTCTCCATTCTTGTACCTTACATATCTTATATATTATCCAAACAAAGGGTCTTTCGTTAGCAAACCTAGAAATCTGCAAAAAATGTCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAACAAACCAATTGCTGGG  >  BK006934/361652‑362173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑