Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGCACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCATGGGGAAGAGTATTCCTGCTATGAATAGAATA  >  BK006934/370749‑371283
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                              
GCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTT                                                                                                                                                                                                                                            >  SRR13385772.821583/1‑301 (MQ=60)
              ACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATA                                                                                                                                                                                                                              <  SRR13385772.1148450/301‑1 (MQ=60)
                       AATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGA                                                                                                                                                                                                                      >  SRR13385772.1180407/1‑300 (MQ=60)
                                      AATACAACGCCAGTGACATCTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGG                                                                                                                                                                                                      <  SRR13385772.778148/301‑1 (MQ=60)
                                            ACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTAT                                                                                                                                                                                                <  SRR13385772.1040539/301‑1 (MQ=60)
                                                                      GGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGTGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTAC                                                                                                                                                                      <  SRR13385772.523350/301‑1 (MQ=60)
                                                                                                 CCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGT                                                                                                                                           <  SRR13385772.836483/301‑1 (MQ=60)
                                                                                                              CTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCCTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGAC                                                                                                                              >  SRR13385772.305067/1‑301 (MQ=60)
                                                                                                                          CGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCCGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTT                                                                                                                  <  SRR13385772.359429/301‑1 (MQ=60)
                                                                                                                                  GTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCT                                                                                                           >  SRR13385772.474660/1‑300 (MQ=60)
                                                                                                                                   TGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTAT                                                                                                         >  SRR13385772.694214/1‑301 (MQ=60)
                                                                                                                                     CCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATAC                                                                                                       >  SRR13385772.452268/1‑301 (MQ=60)
                                                                                                                                                        GAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATAC                                                                                    >  SRR13385772.1039803/1‑301 (MQ=60)
                                                                                                                                                                          TCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGACAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCA                                                                   >  SRR13385772.671314/1‑300 (MQ=60)
                                                                                                                                                                                AACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTC                                                            <  SRR13385772.814450/301‑1 (MQ=60)
                                                                                                                                                                                                           ATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGGATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAATGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCAT                                 <  SRR13385772.117233/301‑1 (MQ=60)
                                                                                                                                                                                                                      CTAATACCAAATATTAAGCCCAAAAGAGTATTTGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGTATCCGCGACGATCTTTCTCTTAATTTCTATACCATTCTTTAAAAAAGATACGATATCTCCCTATACCAATTGTGCATTAACAAACAAACActctgcaagcatcacgcatatc                       >  SRR13385772.398643/1‑278 (MQ=60)
                                                                                                                                                                                                                           ACCAAATATTAAGCCCAAAAGATGATTTGAACATCTTATAAATGATCCTAGGGTGGTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGTCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTGTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATGCTGATATCATGGGGAAGAGTATTCCT                 <  SRR13385772.1116956/301‑1 (MQ=60)
                                                                                                                                                                                                                             CAAATATTAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCAGATATCATGGGGAAGAGTATTCCTGC               >  SRR13385772.1074085/1‑301 (MQ=60)
                                                                                                                                                                                                                                    TAAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCACAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTACAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCATGGGGAAGAGTATTCATGCTATGAAT        >  SRR13385772.1123589/1‑301 (MQ=60)
                                                                                                                                                                                                                                     AAGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGAAGATCTTGTTCTTAATTTCTATAACATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCATGGGTAAGAGTATTCCTGCTATGAATA       <  SRR13385772.89584/301‑1 (MQ=60)
                                                                                                                                                                                                                                      AGCCCAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATACTTATATCATGGGTAAGAGTATTCCTGCTATGAAT        >  SRR13385772.824644/1‑299 (MQ=60)
                                                                                                                                                                                                                                          CAAAAGAGTATTGGAACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGGTGTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCATGGGGAATAGTATTCCTGCTATGAATAGAATA  <  SRR13385772.74702/301‑1 (MQ=60)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                              
GCTGAACATCAAAAACCCAAAAAAATAGAAATCTATAAAATACAACGCCAGTGACAACTGCGAGAAACATTGTGAGCAAGTGAACGCACTAAGGGCACCAATTACTAGACCTGGGAAAAAAACGGTTAAAGTGCCATCAAAGAACAACCACAGAACAATGTTTAATAAGCTCCATGCACCAGCTGCCTGCAAAGAGGAGGACCATTCAAGTTTCCTAATACCAAATATTAAGCCCAAAAGAGTATTGGCACATCTTATAAATGATCCTAGGGTGTTTTTGTAAACTGATGACCTGGTTTTTGGCTGGTGTTGATAACGAACGAAAGAGTCAATGAATGGTACTATGGAACCAAAGATAACACCTTCAGTACCAAATACAGCCCAATCAGGCACCATGTCAGGTTCCGCGACGATCTTGTTCTTAATTTCTATACCATGCTTTAAAAAGGATACGATATCTCCCTTTGCCAATTGGTCATTATCAAACAAACATTCTGATATCATGGGGAAGAGTATTCCTGCTATGAATAGAATA  >  BK006934/370749‑371283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑