Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCTGATTTGTTTTGTTCTGTTTTTTCTTGTTCCGGCGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTACTTGAATCTTTCTCATTAATGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATT  >  BK006934/374477‑375073
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                           
CGCTGATTTGTTTTGTTCTGTTTTTTCTTGTTCCGACGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTATAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCACTGCTT                                                                                                                                                                                                                                                                                                          >  SRR13385772.567679/1‑301 (MQ=60)
         GTTTTGTTCTGTTTTTTCTTGTTCCGACGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTATTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGACTCTTTC                                                                                                                                                                                                                                                                                                 >  SRR13385772.146356/1‑301 (MQ=60)
             TGTTCGGTTTTTTCGTGTTCCGACGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGTCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGGAACGATTAAGAGATTCAATCATGATTGGTCTTCGTCAGACGAATCTTCTAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCA                                                                                                                                                                                                                                                                                              <  SRR13385772.942217/300‑1 (MQ=60)
                   GTTTTTTCTTGTTCCGACGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTgacg                                                                                                                                                                                                                                                                                        <  SRR13385772.617924/300‑5 (MQ=60)
                                              GTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGGTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCGGCGCTCTGCTTGAATCGTTCTCATTGACGTACTCGTGATACTCTTTAAAAGTTGATC                                                                                                                                                                                                                                                            >  SRR13385772.618501/1‑301 (MQ=60)
                                                      CGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCATCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGA                                                                                                                                                                                                                                                    <  SRR13385772.581129/301‑1 (MQ=60)
                                                                                                              TAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGAGCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCC                                                                                                                                                                                            >  SRR13385772.505680/1‑301 (MQ=60)
                                                                                                                    CAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATATTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTAGCTTAAAACGGCGGCAGCGTTTTGAAGATGCGCTCTGCTTGAATCTTTCTAATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATATTCTACGTGGAGTCTAGTAAATAGCAGGATTGAGCCTCCTGCACTC                                                                                                                                                                                      >  SRR13385772.831462/1‑301 (MQ=60)
                                                                                                                         CATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGAT                                                                                                                                                                                                                                                 >  SRR13385772.25046/1‑237 (MQ=60)
                                                                                                                                     TACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAG                                                                                                                                                                       >  SRR13385772.904021/1‑299 (MQ=60)
                                                                                                                                       CAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTGCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTAGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAA                                                                                                                                                                   <  SRR13385772.558516/301‑1 (MQ=60)
                                                                                                                                                   GTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCG                                                                                                                                                       <  SRR13385772.422236/301‑1 (MQ=60)
                                                                                                                                                       GTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTG                                                                                                                                                                                           <  SRR13385772.55239/261‑1 (MQ=60)
                                                                                                                                                                ACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTC                                                                                                                                          >  SRR13385772.1157950/1‑301 (MQ=60)
                                                                                                                                                                                    TGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGCATAGTAACTAGCAGGATTGAGCATACTGCCCTCTTTGAGAATCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGATGGTGCCCATCT                                                                                                                      >  SRR13385772.2735/1‑301 (MQ=60)
                                                                                                                                                                                               CGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTT                                                                                                            <  SRR13385772.467878/300‑1 (MQ=60)
                                                                                                                                                                                                  CAGACTAATCTTCTAATATGTCTTCGTCAATGACACAGTCTTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCTTTTTGACTCTTCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAATTTGATCCACTTAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGTGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGATAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTG                                                                                                        <  SRR13385772.839376/301‑1 (MQ=60)
                                                                                                                                                                                                      CGAAGCTGCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCCATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGT                                                                                                    <  SRR13385772.335041/301‑1 (MQ=60)
                                                                                                                                                                                                       GAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGCGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGT                                                                                                    >  SRR13385772.304696/1‑300 (MQ=60)
                                                                                                                                                                                                                             CAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCAT                                                                             <  SRR13385772.511769/301‑1 (MQ=60)
                                                                                                                                                                                                                                               gccgaaaggcgTGGGCGAGCTTGCTTAAATCGGCTGCAGCGTGTTGACGCGGCGCTCTGCTTGAATCTTTCGCATTGACGTACGCGTTAGACTCTTTAAAAGTTGATCCGCTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAATTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCTTCTATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGGTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCTCGTGGAGAGA                                                            <  SRR13385772.1181301/289‑1 (MQ=60)
                                                                                                                                                                                                                                                                           AACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGT                                >  SRR13385772.875441/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                               GCTGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTAGACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGTAGACATCTGTCCAATTTGCCCCTGTCTCTCTGTAAATA                           <  SRR13385772.38360/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                           TGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTGAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCGCTGTAAATACCCATATATGA                <  SRR13385772.296877/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                    GCTCTGCTTGAATCTTGCTCATGGACGTACTCGTTATACTCTTTAAGAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATA      <  SRR13385772.1105916/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        TGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCCCTGTACATACCCATATATGAACGTTATATATATT  >  SRR13385772.76504/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                           
CGCTGATTTGTTTTGTTCTGTTTTTTCTTGTTCCGGCGAAAAAATCGTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTACTTGAATCTTTCTCATTAATGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATT  >  BK006934/374477‑375073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑