Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTACTTGAATCTTTCTCATTAATGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATG  >  BK006934/374523‑375084
                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                    
GTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGGTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCGGCGCTCTGCTTGAATCGTTCTCATTGACGTACTCGTGATACTCTTTAAAAGTTGATC                                                                                                                                                                                                                                                                       >  SRR13385772.618501/1‑301 (MQ=60)
        CGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCATCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGA                                                                                                                                                                                                                                                               <  SRR13385772.581129/301‑1 (MQ=60)
                                                                TAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGAGCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCC                                                                                                                                                                                                       >  SRR13385772.505680/1‑301 (MQ=60)
                                                                      CAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATATTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTAGCTTAAAACGGCGGCAGCGTTTTGAAGATGCGCTCTGCTTGAATCTTTCTAATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATATTCTACGTGGAGTCTAGTAAATAGCAGGATTGAGCCTCCTGCACTC                                                                                                                                                                                                 >  SRR13385772.831462/1‑301 (MQ=60)
                                                                           CATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGAT                                                                                                                                                                                                                                                            >  SRR13385772.25046/1‑237 (MQ=60)
                                                                                       TACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAG                                                                                                                                                                                  >  SRR13385772.904021/1‑299 (MQ=60)
                                                                                         CAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTGCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTAGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAA                                                                                                                                                                              <  SRR13385772.558516/301‑1 (MQ=60)
                                                                                                     GTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCG                                                                                                                                                                  <  SRR13385772.422236/301‑1 (MQ=60)
                                                                                                         GTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTG                                                                                                                                                                                                      <  SRR13385772.55239/261‑1 (MQ=60)
                                                                                                                  ACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTC                                                                                                                                                     >  SRR13385772.1157950/1‑301 (MQ=60)
                                                                                                                                      TGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGCATAGTAACTAGCAGGATTGAGCATACTGCCCTCTTTGAGAATCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGATGGTGCCCATCT                                                                                                                                 >  SRR13385772.2735/1‑301 (MQ=60)
                                                                                                                                                 CGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTT                                                                                                                       <  SRR13385772.467878/300‑1 (MQ=60)
                                                                                                                                                    CAGACTAATCTTCTAATATGTCTTCGTCAATGACACAGTCTTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCTTTTTGACTCTTCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAATTTGATCCACTTAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGTGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGATAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTG                                                                                                                   <  SRR13385772.839376/301‑1 (MQ=60)
                                                                                                                                                        CGAAGCTGCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCCATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGT                                                                                                               <  SRR13385772.335041/301‑1 (MQ=60)
                                                                                                                                                         GAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGCGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGT                                                                                                               >  SRR13385772.304696/1‑300 (MQ=60)
                                                                                                                                                                               CAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCAT                                                                                        <  SRR13385772.511769/301‑1 (MQ=60)
                                                                                                                                                                                                 gccgaaaggcgTGGGCGAGCTTGCTTAAATCGGCTGCAGCGTGTTGACGCGGCGCTCTGCTTGAATCTTTCGCATTGACGTACGCGTTAGACTCTTTAAAAGTTGATCCGCTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAATTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCTTCTATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGGTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCTCGTGGAGAGA                                                                       <  SRR13385772.1181301/289‑1 (MQ=60)
                                                                                                                                                                                                                             AACGGCGGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGT                                           >  SRR13385772.875441/1‑300 (MQ=60)
                                                                                                                                                                                                                                 GCTGCAGCGTTTTGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTAGACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGTAGACATCTGTCCAATTTGCCCCTGTCTCTCTGTAAATA                                      <  SRR13385772.38360/301‑1 (MQ=60)
                                                                                                                                                                                                                                             TGACGCTGCGCTCTGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTGAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCGCTGTAAATACCCATATATGA                           <  SRR13385772.296877/300‑1 (MQ=60)
                                                                                                                                                                                                                                                      GCTCTGCTTGAATCTTGCTCATGGACGTACTCGTTATACTCTTTAAGAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATA                 <  SRR13385772.1105916/301‑1 (MQ=60)
                                                                                                                                                                                                                                                          TGCTTGAATCTTTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCCCTGTACATACCCATATATGAACGTTATATATATT             >  SRR13385772.76504/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                     TTCTCATTGACGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATG  >  SRR13385772.767368/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                                    
GTAAGAAACGAAAGGAGAACGAGCCCACAGGCGGGGTAACATCAAAAGGATTTATATTAGATCGTAAAGTCAATGCATATGTAACAGTACAGAGGTAGAAGGTATGTATGTGTAACGATTAAGAGATGCAATCATGATTGTTCTTCGTCAGACGAATCTTCGAATATGTCTTCGTCAATGACACAGTCGTTCTCCCAAAAGTCATGGGCGAGCTTGCTTAAAACGGCGGCAGCGTTTTGACGCTGCGCTCTACTTGAATCTTTCTCATTAATGTACTCGTTATACTCTTTAAAAGTTGATCCACTGAGAGATTGTGACTGCGATGTTCTACGTGGAGTATAGTAACTAGCAGGATTGAGCCTCCTGCACTCTTTGAGCCTCAATAGAGAAGCGATCTCCTCGGAGAGTTTTCTTCCCTTATGCTGGTGACCATCTTTAAGTTGTTTGTGTTGTCCTTGTGAAACTGCTGTTTCCATTTTGCCGCGTGGAGACATCTGTCCAATTTGCCCCTGGCTCTCTGTAAATACCCATATATGAACGTTATATATATTGTATATTAATG  >  BK006934/374523‑375084

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑