Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGC  >  BK006934/375496‑376016
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  
AATAACAAAGGAATAAAAAAAAAAGAGCGGTAACTCGCGGAAGCATTGCCGATGCTTAACGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCGTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGAT                                                                                                                                                                                                                              <  SRR13385772.346563/301‑1 (MQ=60)
                                   CGCGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCA                                                                                                                                                                                           <  SRR13385772.906306/301‑1 (MQ=60)
                                     CGGAAGCATTGCCGATGCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTTAAAAGCTTTTGGGATGCTTCTGATATCTCAGA                                                                                                                                                                                         <  SRR13385772.1030511/301‑1 (MQ=60)
                                                     GCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCT                                                                                                                                                                          >  SRR13385772.904025/1‑300 (MQ=60)
                                                     GCTTACCGAGAGTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGATTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTA                                                                                                                                                                         <  SRR13385772.112138/301‑1 (MQ=60)
                                                                GTTGCCGCGGATAACCGAACCATCATTGGTGTATGAAACATTATAAATAGTGGATATAGATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGGGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTTCTGGTTCTGCCCCCCCTGTTGATTACGCGTCGTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGAGCTCGGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAAT                                                                                                                                                              <  SRR13385772.1225734/301‑1 (MQ=60)
                                                                        GGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTCGTCTTGTAATCTCCCAGTGTAAACATAAAAATACACACATACCACTATTACACTCTCTCATCACCTCAATGACTGCTGGTTCTGCCCCCACTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCAGATATCACAGATGACGTCATTGAGATAGCTGGTGGAACGACAAACG                                                                                                                                                      >  SRR13385772.1060576/1‑301 (MQ=60)
                                                                                    CATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCACCCCTGTTGATTACGCTTACTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGCGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTC                                                                                                                                          >  SRR13385772.440035/1‑301 (MQ=60)
                                                                                     ATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCC                                                                                                                                         >  SRR13385772.210206/1‑301 (MQ=60)
                                                                                       CATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTTGTCTTTTAATATCCCATTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTTGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTA                                                                                                                                       <  SRR13385772.926177/301‑1 (MQ=60)
                                                                                                AGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCT                                                                                                                               <  SRR13385772.136067/300‑1 (MQ=60)
                                                                                                          ATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAA                                                                                                                    <  SRR13385772.492451/301‑1 (MQ=60)
                                                                                                          ATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTGTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAA                                                                                                                    <  SRR13385772.647609/301‑1 (MQ=60)
                                                                                                          ATAAATATTTGATAGATAGAAAGGAAAAAGCGTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACGCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTGCTCTCCAGAAGAGTAGAAAAGAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTAGCGAATCTATGGATTTGAA                                                                                                                    <  SRR13385772.970357/301‑1 (MQ=60)
                                                                                                                     ATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTAATCAACTCAACGACTGCTGGTTCTGCCCCACCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAAATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGCAATGCCAAACAACAGAATTTTTCCTATCAAATCTATGGATTTAAAAATATCACAA                                                                                                          >  SRR13385772.400028/1‑300 (MQ=60)
                                                                                                                                 GAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATG                                                                                             <  SRR13385772.390529/301‑1 (MQ=60)
                                                                                                                                                       gcaagcagaagacggcagacgagatcggttcacgggactgagttcagacgtgtgctcttccgatctCTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTC                                                                       <  SRR13385772.1128862/235‑1 (MQ=60)
                                                                                                                                                       TAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGCTAACCCAAAATGGCATGATTC                                                                       >  SRR13385772.79648/1‑301 (MQ=60)
                                                                                                                                                              CCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGATTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGAATGATTCGTTTACC                                                                >  SRR13385772.897598/1‑301 (MQ=60)
                                                                                                                                                                   GTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGC                                                           <  SRR13385772.334545/301‑1 (MQ=60)
                                                                                                                                                                                        TACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGTGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCC                                      >  SRR13385772.1235880/1‑301 (MQ=60)
                                                                                                                                                                                          CCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCC                                     >  SRR13385772.303156/1‑300 (MQ=60)
                                                                                                                                                                                           CACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGA                                                                                                                                                                >  SRR13385772.663515/1‑176 (MQ=60)
                                                                                                                                                                                                                   CAATGACTGCTGGTTCTGCCCCTCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCC‑TTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTT            <  SRR13385772.54983/299‑1 (MQ=60)
                                                                                                                                                                                                                            CTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGC  >  SRR13385772.418769/1‑301 (MQ=60)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  
AATAACAAAGGAATAAAAAAAAAAAAGCGGTAACTCGCGGAAGCATTGCCGATGCTTACCGAGATTTGCCGCGGATAACCGAACCATCATTGGGGTAGGAAACATTATAAATATTTGATATATATAAAGGAAAAAGCTTGATTTGGTCTTGTAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGC  >  BK006934/375496‑376016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑