Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACA  >  BK006934/375647‑376242
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                           
gcaagcagaagacggcagacgagatcggttcacgggactgagttcagacgtgtgctcttccgatctCTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTC                                                                                                                                                                                                                                                                                                         <  SRR13385772.1128862/235‑1 (MQ=60)
TAATATCCCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGCTAACCCAAAATGGCATGATTC                                                                                                                                                                                                                                                                                                         >  SRR13385772.79648/1‑301 (MQ=60)
       CCAGTGTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGATTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGAATGATTCGTTTACC                                                                                                                                                                                                                                                                                                  >  SRR13385772.897598/1‑301 (MQ=60)
            GTAAACATAAAAATACACACATACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGC                                                                                                                                                                                                                                                                                             <  SRR13385772.334545/301‑1 (MQ=60)
                                 TACCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGTGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCC                                                                                                                                                                                                                                                                        >  SRR13385772.1235880/1‑301 (MQ=60)
                                   CCACCATTACACTCTCTCATCAACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCC                                                                                                                                                                                                                                                                       >  SRR13385772.303156/1‑300 (MQ=60)
                                                            CAATGACTGCTGGTTCTGCCCCTCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCC‑TTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTT                                                                                                                                                                                                                                              <  SRR13385772.54983/299‑1 (MQ=60)
                                                                     CTGGTTCTGCCCCCCCTGTTGATTACGCTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGC                                                                                                                                                                                                                                    >  SRR13385772.418769/1‑301 (MQ=60)
                                                                                                             GAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAA                                                                                                                                                                                            <  SRR13385772.59064/301‑1 (MQ=60)
                                                                                                                       CCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGT                                                                                                                                                                                  <  SRR13385772.751357/301‑1 (MQ=60)
                                                                                                                                 CCAGAAGAGTAGAAAATAGATCTCTGAAAAGCGTTTGGGATGCTTCTGATATCTCAGATGACTTCATTGAGCTAGCTGGTGTAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAAT                                                                                                                                                                           <  SRR13385772.118292/298‑1 (MQ=60)
                                                                                                                                                    ATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTT                                                                                                                                                                                                         >  SRR13385772.1302482/1‑249 (MQ=60)
                                                                                                                                                     TCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCACAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAACTATCAAAAGTTACTTTTAATGATAACCAAAAATGGCCTGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGACAGATTTCGTGTCCAGAATTAATCGCCCAGCCTTTTACGATG                                                                                                                                                    >  SRR13385772.956357/1‑301 (MQ=60)
                                                                                                                                                              AGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGT                                                                                                                                           <  SRR13385772.319310/301‑1 (MQ=60)
                                                                                                                                                                            TTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTC                                                                                                                             >  SRR13385772.66030/1‑301 (MQ=60)
                                                                                                                                                                                        gggTGACGTCATTGGGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTCATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGC                                                                                                                 <  SRR13385772.248510/298‑1 (MQ=60)
                                                                                                                                                                                                 CATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAAC                                                                                                        <  SRR13385772.537334/301‑1 (MQ=60)
                                                                                                                                                                                                     GAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAG                                                                                                                                                                                           <  SRR13385772.745966/214‑1 (MQ=60)
                                                                                                                                                                                                               GTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAA                                                                                          <  SRR13385772.752757/301‑1 (MQ=60)
                                                                                                                                                                                                                            CGAGAGATTGTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCGTTGAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGTGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAAGCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAGCA                                                                             <  SRR13385772.1220668/301‑1 (MQ=60)
                                                                                                                                                                                                                                         CCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGTGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAAT                                                                <  SRR13385772.938249/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                       ATAACCCAAAATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCAATGCGATGATTGAAGAGTTTACTTTAACACCGGCTATGTC                  >  SRR13385772.36584/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                 ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGG          >  SRR13385772.119641/1‑299 (MQ=60)
                                                                                                                                                                                                                                                                                                 ATGGCATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTAT                     <  SRR13385772.981395/288‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                      ATGATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTAC   >  SRR13385772.705289/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                        GATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATACGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTGAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGTATCAACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACA  <  SRR13385772.128964/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                           
TAATATCCCAGTGTAAACATAAAAATACACACATACCACAATTACACTCTCTCATCGACTCAATGACTGCTGGTTCTGCCCCCCCTGTTGATTACACTTCCTTAAAGAAGAACTTCCAACCGTTTCTCTCCAGAAGAGTAGAAAATAGATCTCTGAAAAGCTTTTGGGATGCTTCTGATATCTCAGATGACGTCATTGAGCTAGCTGGTGGAATGCCAAACGAGAGATTTTTTCCTATCGAATCTATGGATTTGAAAATATCAAAAGTTCCTTTTAATGATAACCCAAAATGGCATAATTCGTTTACCACGGCGCATTTGGACTTGGGATCCCCCAGTGAGCTACCCATTGCACGTTCTTTCCAATATGCAGAAACCAAGGGTTTACCCCCTCTCTTACATTTTGTTAAAGATTTTGTGTCCAGAATTAATCGCCCAGCCTTTTCCGATGAGACGGAGTCTAACTGGGATGTCATCCTTTCTGGCGGGTCCAACGATTCAATGTTTAAGGTTTTTGAAACAATTTGCGACGAATCGACCACTGTGATGATTGAAGAGTTTACTTTCACCCCGGCTATGTCCAATGTGGAGGCTACA  >  BK006934/375647‑376242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑