Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCTATGAAAGAAGCAATGTTTGAGGGTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAAGTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACG  >  BK006934/376827‑377375
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                 
TTCTATGAAAGAAGCAATGTTTGAGGGTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCGTTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATT                                                                                                                                                                                                                                                            <  SRR13385772.578118/299‑1 (MQ=60)
          GAAGCAATGTTTGAGGGTTGGATAAGATGGATAATGCAGAGTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATT                                                                                                                                                                                                                                                <  SRR13385772.493530/301‑1 (MQ=60)
                ATGTTTGAGGGTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGAGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATT                                                                                                                                                                                                                                          <  SRR13385772.565747/301‑1 (MQ=60)
                    TTGAGGGTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTACGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGATTTGTGTTATACTCGTGCTTGGTTATAAAATGGCTGTTTGACAAAATTATTCAAAGCAGAATTAAGAGTTTCT                                                                                                                                                                                                                                      >  SRR13385772.575150/1‑301 (MQ=60)
                          GTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTGATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACC                                                                                                                                                                                                                                >  SRR13385772.356859/1‑301 (MQ=60)
                                                GATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGAT                                                                                                                                                                                                          <  SRR13385772.1188111/301‑1 (MQ=60)
                                                 ATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGGACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAAAAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTCTTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATG                                                                                                                                                                                                         >  SRR13385772.299027/1‑301 (MQ=60)
                                                    GCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGAT                                                                                                                                                                                                       <  SRR13385772.1045258/300‑1 (MQ=60)
                                                       TCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATC                                                                                                                                                                                                   >  SRR13385772.679465/1‑301 (MQ=60)
                                                            ATACAATCATAGGAAAAATCTTACTTTGAACGCCTTATACGAAACAGAATCTTACCAAGCTGGTAAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCCACAGATGGATATTTTAGATAAGTTCTTGCTGACGAACGGTGTTAAACTAGTGCTAGGTTATAAAATGGCTGTTTGCACAAATTATCCAAAGCAGAATTCAGATTTTATAAGACTCACCATCGCCTACGCAAGTGATGATGATCAGTTG                                                                                                                                                                                              >  SRR13385772.597798/1‑301 (MQ=60)
                                                                                    TTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGT                                                                                                                                                                      >  SRR13385772.371779/1‑301 (MQ=60)
                                                                                       GAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAG                                                                                                                                                                    <  SRR13385772.235901/300‑1 (MQ=60)
                                                                                       GAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGGTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTTTTAAACTAGGGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACGCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGT                                                                                                                                                                   <  SRR13385772.1115265/301‑1 (MQ=60)
                                                                                          AGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGC                                                                                                                                                                <  SRR13385772.486973/301‑1 (MQ=60)
                                                                                                   CGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAA                                                                                                                                                       <  SRR13385772.754952/301‑1 (MQ=60)
                                                                                                                   CAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCGTCCAAAAGAATCTGTATTGGCATAAAAGAATTTTTTGACAACTATA                                                                                                                                       <  SRR13385772.968246/301‑1 (MQ=60)
                                                                                                                                 TACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAG                                                                                                                                                                                                                                                       <  SRR13385772.868000/175‑1 (MQ=60)
                                                                                                                                  ACCGTTATGGAACCCTCCGCGTGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGA                                                                                                                        <  SRR13385772.861154/301‑1 (MQ=60)
                                                                                                                                    CGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCTCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGG                                                                                                                                                                       <  SRR13385772.315355/252‑1 (MQ=60)
                                                                                                                                          GGAACCCTCCGCGTGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACTATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAATAATGGTGTTAAACTAGTGCTTTGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAA                                                                                                                 <  SRR13385772.404578/300‑1 (MQ=60)
                                                                                                                                              CCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTA                                                                                                            <  SRR13385772.872995/301‑1 (MQ=60)
                                                                                                                                                CTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGTCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATG                                                                                                          >  SRR13385772.285971/1‑301 (MQ=60)
                                                                                                                                                  CCGCGGGTATGTTCATCATTATTAAAATCAATTGGGTGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATG                                                                                                          <  SRR13385772.511584/299‑1 (MQ=60)
                                                                                                                                                                ATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATC                                                                                           >  SRR13385772.949830/1‑300 (MQ=60)
                                                                                                                                                                                  gtGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGAGATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATGTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTTAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTGTT                                                                        <  SRR13385772.896025/299‑1 (MQ=60)
                                                                                                                                                                                                   ACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAA                                                                <  SRR13385772.1980/292‑1 (MQ=60)
                                                                                                                                                                                                                        GATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATAT                                  >  SRR13385772.727200/1‑301 (MQ=60)
                                                                                                                                                                                                                                TTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGCTTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAG                                            >  SRR13385772.407581/1‑283 (MQ=60)
                                                                                                                                                                                                                                                  TGAAGAATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATG        >  SRR13385772.375044/1‑301 (MQ=60)
                                                                                                                                                                                                                                                        ATGGTGTTAAACTAGTGCTTGGTTATAAAATGGCTGTTTGCCTAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATACAAGGGATGATGATCAGTTGATTGAAGCTTCCAATAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACG  <  SRR13385772.855573/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                 
TTCTATGAAAGAAGCAATGTTTGAGGGTTGGATAAGATGGATAATGCAGATTGCTTCTAAATACAATCATAGGAAAAATCTTACTTTGAAAGCCTTATACGAAACAGAATCTTACCAAGCTGGTCAGTTTACCGTTATGGAACCCTCCGCGGGTATGTTCATCATTATTAAAATCAATTGGGGGAATTTCGATAGACCTGACGATTTGCCGCAACAGATGGATATTTTAGATAAGTTCTTGCTGAAGAATGGTGTTAAAGTAGTGCTTGGTTATAAAATGGCTGTTTGCCCAAATTATTCAAAGCAGAATTCAGATTTTCTAAGACTCACCATCGCCTATGCAAGGGATGATGATCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACG  >  BK006934/376827‑377375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑