Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTTGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAA  >  BK006934/377181‑377760
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                               
TCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCT                                                                                                                                                                                                                                                                                          >  SRR13385772.658177/1‑300 (MQ=60)
               TTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACT                                                                                                                                                                                                                                                                          >  SRR13385772.1300743/1‑301 (MQ=60)
                 CCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTG                                                                                                                                                                                                                                                                         <  SRR13385772.1296420/300‑1 (MQ=60)
                               AGTGGCATAAAAGAATTTTTTGCCAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAACTTGTAGTTCTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCAAGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTATTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAACGCCCTTTATC                                                                                                                                                                                                                                                           >  SRR13385772.971364/1‑300 (MQ=60)
                                                                              GATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTT                                                                                                                                                                                                           <  SRR13385772.117549/301‑1 (MQ=60)
                                                                                  AAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAACAGTTGGGAAAAAGTTATAGACGCGTATATTTTAAATTAATCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTAATCGCTTTCAATATAGCTCCAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTG                                                                                                                                                                                                        <  SRR13385772.318603/300‑1 (MQ=60)
                                                                                  AAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAACTTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTG                                                                                                                                                                                                        >  SRR13385772.302280/1‑300 (MQ=60)
                                                                                   AACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGAC                                                                                                                                                                                                      >  SRR13385772.300208/1‑301 (MQ=60)
                                                                                     CCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACAT                                                                                                                                                                                                    <  SRR13385772.1094019/301‑1 (MQ=60)
                                                                                                  TGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACTGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGC                                                                                                                                                                                        <  SRR13385772.900102/300‑1 (MQ=60)
                                                                                                                  ATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCC                                                                                                                                                                       <  SRR13385772.533465/301‑1 (MQ=60)
                                                                                                                                            GAAAAAGTTATAATCGCGTATATTTTAAATTACTCTAAGCAAATAACTGGTCACGGTTTCGAGCATGACCTTATGAATCCTTTTACAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGATCACACGTTCTTTCAGACAGTCCAAAATTAGGTCGCTATCAGGTAAGTCCCCTGTAAAGCCCTTTATCACGCTCTATTCGTGTGTTATTTTACCCCCTATGTCACCCCAACATTTTTTGACATCTTCAATAATGATATTCTGATCACTAGCCATCTTATCCGTCTTGGGGCACGTTAC                                                                                                                                             >  SRR13385772.895504/1‑301 (MQ=60)
                                                                                                                                                           GCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACCTCTGAATCCTTTTCCAAATTCCATTTAGCACCGTACTCGCTTTCAATATAGATCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCACTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCAGTAGCCATATTATCCGTCTTGGGGCAAGTTACGATGTATGATGATA                                                                                                                               >  SRR13385772.896761/1‑300 (MQ=60)
                                                                                                                                                               ATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGA                                                                                                                           >  SRR13385772.629147/1‑300 (MQ=60)
                                                                                                                                                                       AATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTG                                                                                                                  >  SRR13385772.426422/1‑301 (MQ=60)
                                                                                                                                                                                                   GTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATC                                                                                      <  SRR13385772.948581/301‑1 (MQ=60)
                                                                                                                                                                                                       AGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGAGGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAA                                                                                   <  SRR13385772.327491/300‑1 (MQ=60)
                                                                                                                                                                                                                    CTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGC                                                                     >  SRR13385772.187193/1‑301 (MQ=60)
                                                                                                                                                                                                                            TTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCT                                                                                                                                                                                  >  SRR13385772.1222466/1‑184 (MQ=60)
                                                                                                                                                                                                                                   AATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCT                                                      <  SRR13385772.903404/301‑1 (MQ=60)
                                                                                                                                                                                                                                                   GTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACA                                       >  SRR13385772.139271/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                      GACCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGC    >  SRR13385772.1263133/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                       GCCGTCCAAAATTAGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCGATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAA  <  SRR13385772.857654/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                               
TCAGTTGATTGAAGCTTCCAAAAGAATCGGTAGTGGCATAAAAGAATTTTTTGACAACTATAAAAGTTGAACAGTGAAGATTAAACCTATGTGTTATTTGCATATCATATATAAATTGTAGTTTTTTGTATAAAAGTTGGGAAAAAGTTATAGTCGCGTATATTTTAAATTACTCTAAGCAACTAAATGGTCACGGTTTAGAGCATGAACTTCTGAATCCTTTTCCAAATTGCATTTAGCACCGTACTCGCTTTCAATATAGCTCAAACGTTCTTTCAGACCGTCCAAAATTTGGTCGCTATCAGGTAAGTCCACTGTAAAGCCCTTTATCAAGCTATATTCGTGTGTTATTTTACCCCCTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAA  >  BK006934/377181‑377760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑