Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
6054 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCGTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTT > BK006934/377542‑378132
|
ATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCC < SRR13385772.666122/299‑1 (MQ=60)
ACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGT < SRR13385772.697702/301‑1 (MQ=60)
TGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCATCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGG > SRR13385772.850907/1‑301 (MQ=60)
CCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAAT > SRR13385772.6052/1‑300 (MQ=60)
TATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAAAGCAACTTATACATTTGTTCTCTCAATCGCATCGCTTTTTATTAAATACTTTTGCCCCCCACCACTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTT > SRR13385772.1144390/1‑301 (MQ=60)
ATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTTCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAAT > SRR13385772.694413/1‑300 (MQ=60)
CCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGG < SRR13385772.171581/301‑1 (MQ=60)
AGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTACTCTTTTCagatcggaagagcacacgtctgaatccagtcacgtgaaacgaactcgtatgcaggctcctgcttgaaa > SRR13385772.661262/1‑232 (MQ=60)
GTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATT < SRR13385772.972265/300‑1 (MQ=60)
ATGGTAAGGAAGATGACTGTGCCATGGAGAATATGCTAATGAAAATAAAAACTAAGTAACTGGCATTAATATATATGCTATAGTCTGTTACACAATAGCTTTAAATGTTGTAATATAACGAGGAAACGCCACTTATACATTTGTTATCTCCATCGCATCGCTTTTTATTAAATACTTTTGAACCCCACCCCTTTCTCCAATTGCCTTTTCCTCTTTTCTTCGCATCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTC < SRR13385772.546340/301‑1 (MQ=60)
AGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTCTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATCGGAACTGAATATTAGAAATTATTGACGTCAATAT > SRR13385772.1260044/1‑300 (MQ=60)
TAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCCCCGACCGATCTAATCTGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTTAATTCAATATACTGTAAAAACTATAAATCCTGTAACGAAC > SRR13385772.393374/1‑300 (MQ=60)
AATGAAAATCAAAACTAAGTAACTGTCCTTCATAGATATGCTATAGGCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCGCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTGTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACA < SRR13385772.478393/300‑1 (MQ=60)
TCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCGCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCGTTTTGGTAGCGCCGACCGATCT < SRR13385772.161556/204‑1 (MQ=60)
AAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAA < SRR13385772.286850/301‑1 (MQ=60)
AAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAAAGAGGAAACGCAACTTATCAATTTGTTCTCTCCATCGCATCGCTTATTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCAGCCAGATCTAATCGGAATAATCAAATTTAATAGGAACTGAACATTAGAAATTATTGAAGTAAATAAACTGTAAAAACTATAAATCCTGTAAAGAACATAAAAAAAGAAAcaat > SRR13385772.890617/1‑296 (MQ=60)
TAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAA > SRR13385772.963729/1‑299 (MQ=60)
GGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGC > SRR13385772.345786/1‑301 (MQ=60)
ATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCCTTTTGGTAGCGCCGACCGATCCAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACGTAAAAAAAGAAAACCTAAAGGAAGCGCGTGATGTAAC > SRR13385772.1263272/1‑300 (MQ=60)
CTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGCTCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGCAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATACAAACAGAAAACATAAAGGAAGCGAGTGATGTATCAGT > SRR13385772.926081/1‑300 (MQ=60)
TATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTA > SRR13385772.875042/1‑300 (MQ=60)
ATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTTGTAGCGCCGACCGCTCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAACGAAAACATAAAGGAAGCGCGTGATGTAACAGTAAC > SRR13385772.1032397/1‑301 (MQ=60)
AATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGGGTGATGTATG > SRR13385772.218195/1‑271 (MQ=60)
GTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAAATATAAATACTGTAACGAACATAAAAAAAGAAAACATAACGGAAGCGCGTGATGTATCAGTAACATCAAATAGTAAACTAACAAAGAAAGGGA > SRR13385772.707425/1‑300 (MQ=60)
ACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTTGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTACAAATTATTGAAGTCAATATACTTTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCCAGTGATGTATCTGTAACATCACATAGTACAAAAAAAAAGAAAGAGAACACTGAT > SRR13385772.659221/1‑300 (MQ=60)
CGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTA < SRR13385772.722725/301‑1 (MQ=60)
ACTTTTGCCCCCCACGCCTTGTTCCACTTGCCGTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATAGTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGATCATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAATAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCC < SRR13385772.84713/300‑1 (MQ=60)
TTCACTTGCCTTTTCCTCGTTTCTTCGCCTCTTTTTTGTAGCGGCGACCGGTCTAATCGGAATAATTAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTT < SRR13385772.1055067/300‑1 (MQ=60)
CCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTT < SRR13385772.1125716/301‑1 (MQ=60)
CCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTT < SRR13385772.779527/300‑1 (MQ=60)
GCCTTTTCCTCTTGTCTTCGCCTCTTTTTGGTAGCGACGACCGAGCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACAGCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTGTTGTTTT < SRR13385772.187642/301‑1 (MQ=60)
|
ATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCGTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTT > BK006934/377542‑378132
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |