Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
6081 |
0.0 |
0 |
0.0% |
0 |
0.0 |
Breseq alignment
N/A
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCGTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGT > BK006934/377540‑378123
|
CTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCAGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGACTATGCTAATGACAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATCGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTCTATCCACTTGCATTTTCC > SRR13385771.1645530/1‑301 (MQ=60)
TGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTATCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCT > SRR13385771.1846590/1‑301 (MQ=60)
GTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCT < SRR13385771.400620/300‑1 (MQ=60)
ACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCT > SRR13385771.1096149/1‑301 (MQ=60)
AATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCTATGGAGAATATTCTAATGAAAAGCAAAACTAAGTAACTGGCCTTCATATATATGCCATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGATTAAACTCAACCTATCCATTTGTGCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTTGTAGCGCCGC > SRR13385771.683070/1‑301 (MQ=60)
ATCCGTCTTGGGGAACGTTACGATGTCTGATGATAAGGAAGATGCCTGTGCAATGGAGAATATGCTAATGAAAATCAAAACTAAGTCACTGGCCTTCATATATATGCTATAGTCTGTTCCACAATAGATTTACATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTACCCATCGCATCGCTTTCTCTTAAATACTTTTGCCCCCAACCACTTTATACACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCAGACCGCTCTCATCGGAATAATCAAATTTAAT > SRR13385771.1059149/1‑300 (MQ=60)
CGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGAGCCGACCGATCTAATCGGAATAATCAAATTTCATAGG > SRR13385771.212613/1‑300 (MQ=60)
GTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATCGGA > SRR13385771.1045905/1‑300 (MQ=60)
CGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATT < SRR13385771.1175297/301‑1 (MQ=60)
GATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAATCTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTGTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAA < SRR13385771.1738400/301‑1 (MQ=60)
ATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAAT > SRR13385771.1096027/1‑301 (MQ=60)
AGATGCCTGTGCCATGGATAATATGCTAATGAAAATCAAAACTTAGTAGCTGGTCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCGTCGCTTTTTCTTAAATACTTTTGCCCCCGACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGT < SRR13385771.1803787/301‑1 (MQ=60)
CATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATCGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAA > SRR13385771.858430/1‑300 (MQ=60)
AATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAA < SRR13385771.463182/301‑1 (MQ=60)
TATATGCGATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGT > SRR13385771.738493/1‑300 (MQ=60)
TATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCACCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTAT > SRR13385771.299010/1‑300 (MQ=60)
GTTACACAATAGATTTAAATGTTGGAATATAACGAGGAAACGCAACTTATCCATTTGTGCTCTCCATCTCATCGCTGTTTCTTAAAGACGTTGGCCCCCCACCCCTTGATCCACTTGCCTTTTCCTCTTTGCATCGCCTCGTTGTGGTAGCGCCGACCGATCTAATCGGAAT‑ATCAAATTTAATAGGAACGGAATATTAGAAATTATTGAAGGCAATATACTGTAAAAACTATAAAGCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACA < SRR13385771.322921/299‑1 (MQ=60)
TGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATAACATAGTACAATAAAAAAAAAA > SRR13385771.1625084/1‑300 (MQ=60)
GTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAACGCGTGATGTATCAGTAACATCAAATAGTACAATAAAAAAGAAAGAGA > SRR13385771.356705/1‑300 (MQ=60)
GTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTCGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGA > SRR13385771.98846/1‑300 (MQ=60)
CCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCCATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACA > SRR13385771.1563930/1‑300 (MQ=60)
CATTTGTTCTCTCCATCGCATCGCTTTGTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTAGTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACTAACATAAAAAAAGAAAACATAAAGTAAGCGCGTGATGTATCAGTAACATCACATATTACAAGAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAA < SRR13385771.1683172/301‑1 (MQ=60)
TTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAAC < SRR13385771.526888/300‑1 (MQ=60)
TCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGTTCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTA < SRR13385771.1094878/300‑1 (MQ=60)
CCATCGCCTCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAA < SRR13385771.258367/300‑1 (MQ=60)
CCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTCATCGGAATAATCAAATTTAATAGGAACTGACTATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGAGTGATGTATCAGTCACATCACATAGTACAATAAACAAGACAGCGAACACCGATAATAACTGTACTGAAGACAAACAATTAGGCA > SRR13385771.1235392/1‑299 (MQ=60)
TTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTT < SRR13385771.863050/300‑1 (MQ=60)
ACTTTTGCCCCCCACCCCTTTATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGAACTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATACTGTCACGAACATAAAAAAAGAAAACATAAAGGAAGAGCGTGATGTATCAGTAACATCCCATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGcagatccttctttcgctc > SRR13385771.1836769/1‑282 (MQ=60)
TATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGCCCGCTCTAATCGGACTAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAAAATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGT > SRR13385771.1468061/1‑301 (MQ=60)
TATCCACTTGCCTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTG < SRR13385771.207356/300‑1 (MQ=60)
|
CTATGTCCACCACATATTTTTTGACATCTTCAATAATGCTATTCTGGTCCGTAGCCATATTATCCGTCTTGGGGAAAGTTACGATGTATGATGATAAGGAAGATGCCTGTGCCATGGAGAATATGCTAATGAAAATCAAAACTAAGTAACTGGCCTTCATATATATGCTATAGTCTGTTACACAATAGATTTAAATGTTGTAATATAACGAGGAAACGCAACTTATCCATTTGTTCTCTCCATCGCATCGCTTTTTCTTAAATACTTTTGCCCCCCACCCCTTTATCCACTTGCGTTTTCCTCTTTTCTTCGCCTCTTTTTGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGT > BK006934/377540‑378123
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
