Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GAACATACTTGTGTTATGTTGAACGTTTTGGAAGGCAGAGAATCAAACTGGCTCGTTGAATTTGCCAAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGGTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATCATGAGAAAAATGTCTCAGTACTTCCGTCAGCTGTTAAGCCAATCAATTGAAGAAACTCTACCAAATATCAAAGAT  >  BK006947/377589‑378143
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                
GAACATACTTGTGTTATGTTGAACGTTTTGGAAGGCAGAGAATCAAACTGGCTCGTTGAATTTGCCAAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTG                                                                                                                                                                                                                                                                <  SRR13385772.807227/301‑1 (MQ=60)
                                                   CTCGTTGAATTTGCCAAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAATAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATT                                                                                                                                                                                                             >  SRR13385772.571473/1‑301 (MQ=60)
                                                               GCCAAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTAT                                                                                                                                                                                                 <  SRR13385772.21481/301‑1 (MQ=60)
                                                                  AAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGTCGATAAAATGGGAGATTCAGTAAAACTATCA                                                                                                                                                                                               >  SRR13385772.1168456/1‑300 (MQ=60)
                                                                     GATTTACGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTCAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTCTCAAGCG                                                                                                                                                                                           >  SRR13385772.986737/1‑301 (MQ=60)
                                                                          CCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAATCATGATGATAAAGAATTGACGCGGACGCATCTGGATTACATTTTTTCTCCATGTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAG                                                                                                                                                                                      <  SRR13385772.1192041/301‑1 (MQ=60)
                                                                                                                           GCCGTTCAAGCCTTAAGGGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGGCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACAC                                                                                                                                       <  SRR13385772.400558/299‑1 (MQ=60)
                                                                                                                              GTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGCGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAATACATCGACACTATTC                                                                                                                                  >  SRR13385772.293350/1‑301 (MQ=60)
                                                                                                                                        TAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAAT                                                                                                                         <  SRR13385772.1293478/300‑1 (MQ=60)
                                                                                                                                                                              TCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGACAAGATTGGATAGCTACTCCAATAATTTGCTAGATTATCACGTTATCGTTGATATGCTACCCATTCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCCGTCAAACTATCAAGCGTCCAGCGTGCTCTCATGTTGGCTATCGGGTTCCAGCGTAAAAACCTCGACCCTATTGCCACGGAATTGAATTTAACTTCCAATCAAACTATTGCTATctttcct                                                                                   >  SRR13385772.660924/1‑293 (MQ=60)
                                                                                                                                                                                    GACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATC                                                                             >  SRR13385772.172151/1‑300 (MQ=60)
                                                                                                                                                                                       GAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTG                                                                                     <  SRR13385772.405466/289‑1 (MQ=60)
                                                                                                                                                                                                          AATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACGTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGAGATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGATATTCAGTAAAACTATCAAGCGGCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATCATGAGAAAAATGTCTCAGTACTT                                                      <  SRR13385772.722582/301‑1 (MQ=60)
                                                                                                                                                                                                                                                       TGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATCATGAGAAAAATGTCTCAGTACTTCCGTCAGCTGTTAAGCCAATCAATTGAAGAAACTCTACCAAATA          <  SRR13385772.947775/300‑1 (MQ=60)
                                                                                                                                                                                                                                                              ATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGTTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATCATGAGAAAAATGTCTCAGTACTTCCGTCAGCTGTTAAGCCAATCAATTGAAGAAACTCTACCAAATATCAAAGAT  <  SRR13385772.1301794/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                
GAACATACTTGTGTTATGTTGAACGTTTTGGAAGGCAGAGAATCAAACTGGCTCGTTGAATTTGCCAAAGATTTCCGTAAAAGATTTCTGTCGCTTCTTTCTTATGATTTTCATAAGTTTACTGCCGTTCAAGCCTTAAGTGTCATTGAAAGTAGTAAGAAAGCACAAGATTTGTCTGATGACGAAAAGCATGATAATAAAGAATTGACGCGGACGCATCTGGATGACATTTTTTCTCCATTTGACTTGAAAAGATTGGATAGCTACTCAAATAATTTGCTAGATTATCACGTTATCGGTGATATGATACCCATGCTTGCTCTTTTGTACTTCGGCGATAAAATGGGAGATTCAGTAAAACTATCAAGCGTCCAGAGTGCTATCCTGTTGGCTATAGGGTTACAGCGTAAAAACATCGACACTATTGCCAAGGAATTGAATTTACCTTCCAATCAAACTATTGCTATGTTTGCGAAGATCATGAGAAAAATGTCTCAGTACTTCCGTCAGCTGTTAAGCCAATCAATTGAAGAAACTCTACCAAATATCAAAGAT  >  BK006947/377589‑378143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑