Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGTCCATGATGCCAC  >  BK006934/377860‑378449
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
TGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTAT                                                                                                                                                                                                                                                                                                    <  SRR13385772.592355/300‑1 (MQ=60)
           ACCGATCTAATCGGAATAATCAAATTGAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAGAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACAGCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACGATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTT                                                                                                                                                                                                                                                                            <  SRR13385772.895887/301‑1 (MQ=60)
                      CGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTT                                                                                                                                                                                                                                                                  <  SRR13385772.1192886/300‑1 (MQ=60)
                                    TTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAAC                                                                                                                                                                                                                                                    >  SRR13385772.782495/1‑300 (MQ=60)
                                                GAAAATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTT                                                                                                                                                                                                                                       <  SRR13385772.620961/301‑1 (MQ=60)
                                                                  AAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGGCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTAGTTTAGTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGG                                                                                                                                                                                                                      <  SRR13385772.163947/300‑1 (MQ=60)
                                                                           TACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTT                                                                                                                                                                                                            >  SRR13385772.1110075/1‑301 (MQ=60)
                                                                              TGTAAAAACTATAACTCCTGTAACGAACATAAAAAAAGCAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTCTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGT                                                                                                                                                                                                          >  SRR13385772.1228057/1‑300 (MQ=60)
                                                                              TGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGACGATTTGTTGT                                                                                                                                                                                                          >  SRR13385772.925633/1‑300 (MQ=60)
                                                                                        ATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACT                                                                                                                                                                                               <  SRR13385772.842379/301‑1 (MQ=60)
                                                                                                                     AAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAG                                                                                                                                                                  <  SRR13385772.98448/301‑1 (MQ=60)
                                                                                                                         ATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAA                                                                                                                                                              <  SRR13385772.706311/301‑1 (MQ=60)
                                                                                                                           AAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAAC                                                                                                                                                             >  SRR13385772.208439/1‑300 (MQ=60)
                                                                                                                                                     AATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACGATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAG                                                                                                                                  <  SRR13385772.303364/301‑1 (MQ=60)
                                                                                                                                                                   ATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAA                                                                                                                     >  SRR13385772.545719/1‑300 (MQ=60)
                                                                                                                                                                                           AATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTAACCAGCAGAAATTGCACCTTGTGGAATACTTGTGT                                                                                             <  SRR13385772.502390/300‑1 (MQ=60)
                                                                                                                                                                                                                                       TTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCA                                                 <  SRR13385772.392373/300‑1 (MQ=60)
                                                                                                                                                                                                                                                 CCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATA                                      <  SRR13385772.489578/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                     cataacaatatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACA                               <  SRR13385772.430006/288‑1 (MQ=60)
                                                                                                                                                                                                                                                                           aatatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGT                        <  SRR13385772.101208/295‑1 (MQ=60)
                                                                                                                                                                                                                                                                             tatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATATACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTTGATCCATCACTTGCATAAACGACAGGGAAGTCG                      >  SRR13385772.30926/5‑301 (MQ=60)
                                                                                                                                                                                                                                                                              atgTGTTTTTGTTTTTGTTTGTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGA                     <  SRR13385772.182853/298‑1 (MQ=60)
                                                                                                                                                                                                                                                                                GTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCAGCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACC                   <  SRR13385772.1193778/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                      TTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGT              <  SRR13385772.108323/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                         CTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAATCGACCGATGTCCAT          >  SRR13385772.654098/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                  TTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGTCCATGATGCCAC  <  SRR13385772.909631/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                   
TGGTAGCGCCGACCGATCTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGTCCATGATGCCAC  >  BK006934/377860‑378449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑