Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 6081 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGTCCATGATGC  >  BK006934/377877‑378446
                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                
CTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTT                                                                                                                                                                                                                                                                   >  SRR13385771.1228563/1‑301 (MQ=60)
  AATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCGGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGAGCTTTTTGTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTGGTTTTTATTTTATTTAGTTTTTGCTTA                                                                                                                                                                                                                                                                  <  SRR13385771.1694221/300‑1 (MQ=60)
      GGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTC                                                                                                                                                                                                                                                             <  SRR13385771.47182/301‑1 (MQ=60)
              CAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACA                                                                                                                                                                                                                                                     <  SRR13385771.901644/301‑1 (MQ=60)
                          GAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATC                                                                                                                                                                                                                                         >  SRR13385771.528818/1‑301 (MQ=60)
                                        AAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGAC                                                                                                                                                                                                                           >  SRR13385771.183665/1‑301 (MQ=60)
                                              GTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTT                                                                                                                                                                                                                                                                        <  SRR13385771.1236009/250‑1 (MQ=60)
                                                                       ATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACT                                                                                                                                                                                            >  SRR13385771.400292/1‑301 (MQ=60)
                                                                                     GAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGACGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTCTTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGCT                                                                                                                                                                              >  SRR13385771.1268520/1‑301 (MQ=60)
                                                                                       ACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTA                                                                                                                                                                            <  SRR13385771.295743/301‑1 (MQ=60)
                                                                                                 AGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCA                                                                                                                                                                   >  SRR13385771.1379922/1‑300 (MQ=60)
                                                                                                   AAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATA                                                                                                                                                                <  SRR13385771.1718554/301‑1 (MQ=60)
                                                                                                          AAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGCTAATAATTGTACTGAAGACAAACCATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTCTTTATTTTTTGCTTATTTTCGTAGTACACACCACATAATCATCTTATTGTTGACTAACAGGGAAGATCTGTTGTAACTCGCTACTACTTGTGAATTGATTATGGTTAGCAATAGACAAC                                                                                                                                                          >  SRR13385771.297687/1‑300 (MQ=60)
                                                                                                                AGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTG                                                                                                                                                                                                           >  SRR13385771.911130/1‑245 (MQ=60)
                                                                                                                  CGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGC                                                                                                                                                 >  SRR13385771.45222/1‑301 (MQ=60)
                                                                                                                                                        gtggttgtttgtgtggttgggcttggtgggttgtgtgtttgttggttaggtgtttgtgtttggttgtgtgtttttttgtgtgtctttgttTGTGTTTTTGTTTTTGTGTTGGTTTTTGTTTTTGTTTTTGgggtcgttttgtgttgttgtgtggttgttggtgttgctgttttttgttgtgtgtttttgtttttttgagtttttggttttttgtttggttttgtttttttttttttgccaagcagaggccgtcatactatattcaattgtgacgggatttcagacgtgtgctcttccgat                                                                                                                        <  SRR13385771.761602/210‑171 (MQ=2)
                                                                                                                                                             AGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTG                                                                                                      <  SRR13385771.987096/301‑1 (MQ=60)
                                                                                                                                                                         TAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACGTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTTCACCTTGTGGAATACTTGTGT                                                                                          >  SRR13385771.888082/1‑301 (MQ=60)
                                                                                                                                                                                            AAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAA                                                                                                                                >  SRR13385771.663894/1‑244 (MQ=60)
                                                                                                                                                                                                AATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAA                                                                   <  SRR13385771.901069/301‑1 (MQ=60)
                                                                                                                                                                                                                       TTCTTTCGTCCAGTCATCATGTCAATATG‑‑‑‑‑‑‑‑‑‑‑‑TGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTAGTTATGTTTTGCTTATTTTCGTAGTACACAACGCATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGGACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGAT                                                 <  SRR13385771.683749/296‑1 (MQ=60)
                                                                                                                                                                                                                                                   tcataacaatatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGAC                             >  SRR13385771.482818/14‑300 (MQ=60)
                                                                                                                                                                                                                                                      taacaatatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCTCTACTACCTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGG                         >  SRR13385771.519641/11‑301 (MQ=60)
                                                                                                                                                                                                                                                         caatatgTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTCTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTTACAAGTACCCAGCAGAAATTGCACCTGGTGGAATACTTGTGTTACTTATGAACCCACTTCCTGAACCATCATGACCACTGGATCCATCACTTGCATcaccgacatcga                        >  SRR13385771.1128313/8‑287 (MQ=60)
                                                                                                                                                                                                                                                                             GTTTTTGTTTTTGTTCTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGTTTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCATTGGATCCATCACTTGCATAAACGACAGGTAAGTCGACTGTTGTCCATGATGC  >  SRR13385771.938402/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                              TTTTTGTTTTTTTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGTAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGTTTGGTGACAAGTACCCAGCAGAAATGGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATGATGACCACTTGATCCATCACTTGCATAGACGACAGGGAAGTCGACCGATGTCCATGATGC  <  SRR13385771.1414363/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                
CTAATCGGAATAATCAAATTTAATAGGAACTGAATATTAGAAATTATTGAAGTCAATATACTGTAAAAACTATAAATCCTGTAACGAACATAAAAAAAGAAAACATAAAGGAAGCGCGTGATGTATCAGTAACATCACATAGTACAATAAAAAAGAAAGAGAACACTGATAATAACTGTACTGAAGACAAACAATTAGGAAAGTAACGACGATCTTTCTTTCGTCCAGTCATCATAACAATATGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTATTTTATTTATTTTTTGCTTATTTTCGTAGTACACAACACATAATCATCTTATTGTTGACTAACAGGGAAGATTTGTTGTAACTCGCTACTACTTGTGACTTGATTATGGATAGCAATAGACAACAAAGTTTGCGCTTGGATTGGTGACAAGTACCCAGCAGAAATTGCACCTTGTGGAATACTTGTGTTACTTATGAACCCAATTCCTGAACCATCATGACCACTGGATCCATCACTTGCATAAACGACAGGGAAGTCGACCGATGTCCATGATGC  >  BK006934/377877‑378446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑