Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGAC  >  BK006934/381492‑382088
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                          
TAGTTCTGTTATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTCTACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTC                                                                                                                                                                                                                                                                                                            >  SRR13385772.1239738/1‑299 (MQ=60)
         TATAATTAAATTCGTTTTGGATTTTGATTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCGTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACG                                                                                                                                                                                                                                                                                                  <  SRR13385772.675013/300‑1 (MQ=60)
         TATAATTAAATTCGTTTTGGATTTTGAGTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACG                                                                                                                                                                                                                                                                                                  <  SRR13385772.241843/300‑1 (MQ=60)
                                        AAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCC                                                                                                                                                                                                                                                                  >  SRR13385772.662545/1‑301 (MQ=60)
                                                   ATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTT                                                                                                                                                                                                                                                                     <  SRR13385772.324555/287‑1 (MQ=60)
                                                                                     TGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTAATTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATCAC                                                                                                                                                                                                                     >  SRR13385772.252517/1‑301 (MQ=60)
                                                                                                 AAAATTGCAGGGAATGACTAAAATCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCA                                                                                                                                                                                                         <  SRR13385772.183904/301‑1 (MQ=60)
                                                                                                                GACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTATATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAA                                                                                                                                                                                          <  SRR13385772.242473/301‑1 (MQ=60)
                                                                                                                        GGCCACGTTTGTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCGTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAA                                                                                                                                                                                  <  SRR13385772.873888/301‑1 (MQ=60)
                                                                                                                          CCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGCTGTTGATCATTTCTGAAATGAGATATTGGGAATAAGCTGTATCTACATCTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCAAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGT                                                                                                                                                                                >  SRR13385772.440208/1‑301 (MQ=60)
                                                                                                                                                             AGATAGATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGTCAGGATGAAAAATTACGCCAAATAGGCAGGTTTGCAATATTAAAGAGTTAAGTATGCAAAATGTACAAAAAGTTAATGGTCAAAGTA                                                                                                                                              >  SRR13385772.920698/1‑300 (MQ=60)
                                                                                                                                                                  GATTGAACGTTGCTGGGCGCCTGATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTA                                                                                                                                        <  SRR13385772.485648/301‑1 (MQ=60)
                                                                                                                                                                            TGCTGGGCGCCTGATGTTGATCAGTGCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTGATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATAT                                                                                                                               <  SRR13385772.223322/300‑1 (MQ=60)
                                                                                                                                                                                         ATGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCCGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTATAAAACAGGTTCACAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAA                                                                                                                  >  SRR13385772.836190/1‑300 (MQ=60)
                                                                                                                                                                                                 CATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAACAAATAAC                                                                                                          >  SRR13385772.291516/1‑300 (MQ=60)
                                                                                                                                                                                                                                          TTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCTAACGCCTACGTGTCTTGTTAACTTATCATGTTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCATGATGAAAAATTACGCCAAATAGGCAGGTT                                                                                                                                                                                                     <  SRR13385772.928931/168‑1 (MQ=60)
                                                                                                                                                                                                                                                      TATTTATTTTTACTGGTTCTTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTC                                                     >  SRR13385772.149861/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                         TTAGTAACGTACTTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAACAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCaaaaggcttacatctacta                                  >  SRR13385772.793842/1‑281 (MQ=60)
                                                                                                                                                                                                                                                                                     TTTTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTACTTACATCTCTTCAAGGTTAATTGGG                     >  SRR13385772.265533/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                       TTGTAGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGT                                                                                                                                                     >  SRR13385772.977046/1‑171 (MQ=60)
                                                                                                                                                                                                                                                                                           AGCAATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTA                <  SRR13385772.809039/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                              AATGCTGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTAT            <  SRR13385772.317333/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                   TGTGTTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAG                                                                                                                                                                                      <  SRR13385772.988849/126‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                       TTTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTG    <  SRR13385772.1304372/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                        TTCAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGAC  >  SRR13385772.719353/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                          
TAGTTTTGTTATAATCAAATTCCTTTTGGTTTTTGTTTTAAAAAGGCCAACATCATAATTATATCGCGAATGTACTACTAGTATATGCAGTTTTCTTAAAATTGCAGGGAATGACTAAAAGCCCACGTTTTTCCCACTTTTAGTAGTACTGAAGCGTAGATAGATTGAACGTTGCTGGGCGCCTGGTGTTGATCATTTCTGAAATGAGATATTGGGAATCAGCTGTATCTACATTTTATTTATACATATTTATTTTTACTGGTTCTTAGTAACGTACTTTAGTAGCAATGCTGTGTTTTAGTGCGAACGCCTACGTGTCTTGTTAACTTATCATGGTTGCCAACGCGAACGTTTACAACAGGTTCAAAGGCAGGATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGAC  >  BK006934/381492‑382088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑