Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACAGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAAAAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC  >  BK006934/381865‑382441
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                            
GATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAAC                                                                                                                                                                                                                                                                                        <  SRR13385772.486563/301‑1 (MQ=60)
                AAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTC                                                                                                                                                                                                                                                                        <  SRR13385772.1048937/301‑1 (MQ=60)
                    AGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATA                                                                                                                                                                                                                                                                     <  SRR13385772.867337/300‑1 (MQ=60)
                                  TATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTG                                                                                                                                                                                                                                                      >  SRR13385772.52896/1‑301 (MQ=60)
                                     TAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAATCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGTCTCTAGTCTTACATTTGACACATTCCAATCTTAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTTGTTTGACCACCGAAACCAGATTGTTTACGTTCATAACGTCTCTTACCTTGAG                                                                                                                                                                                                                                                    <  SRR13385772.147082/300‑1 (MQ=60)
                                      AAAGAGTTAAGTATGCAAAATTTACAAAAATTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTTGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCG                                                                                                                                                                                                                                                  <  SRR13385772.765033/301‑1 (MQ=60)
                                                                                         ATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAAACAGGAAGCCTTACCAGCTTTGTATTGAGTAACATTGTGTTGAGTGTGT                                                                                                                                                                                               >  SRR13385772.893143/1‑301 (MQ=60)
                                                                                            AAAATATAATAAAACAATAAACCATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAACACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCCGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTTCGTAACCTTGTGTTGAGTGTGCTT                                                                                                                                                                                             >  SRR13385772.826035/1‑300 (MQ=60)
                                                                                             AAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTTAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTTTGTTGAGTGTGCTTAC                                                                                                                                                                                           >  SRR13385772.1225167/1‑301 (MQ=60)
                                                                                                    ATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGT                                                                                                                                                                                    >  SRR13385772.42688/1‑301 (MQ=60)
                                                                                                        AACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAATGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTT                                                                                                                                                                                 >  SRR13385772.839380/1‑300 (MQ=60)
                                                                                                        AACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTT                                                                                                                                                                                 >  SRR13385772.181278/1‑300 (MQ=60)
                                                                                                                            CTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCT                                                                                                                                                            >  SRR13385772.27330/1‑301 (MQ=43)
                                                                                                                                                CCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTG                                                                                                                                        <  SRR13385772.658017/301‑1 (MQ=51)
                                                                                                                                                                             GAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCGTAGCTTTCTTGTGGAAAACGGGCTTGGTTGGACCACCGAAACCAGAGTGTTTACGGTCATAACGTCTCTTACCGTGAGCGAACAAGGAATCCTGACCAGCTGTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGC                                                                                                           <  SRR13385772.186854/301‑1 (MQ=60)
                                                                                                                                                                                    TTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGAT                                                                                                      >  SRR13385772.163911/1‑299 (MQ=60)
                                                                                                                                                                                            CTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGAT                                                                                               <  SRR13385772.1073820/298‑1 (MQ=60)
                                                                                                                                                                                                  GGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAAGCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAA                                                                                      <  SRR13385772.455597/301‑1 (MQ=60)
                                                                                                                                                                                                    TTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTT                                                                                                                                                     >  SRR13385772.981823/1‑236 (MQ=30)
                                                                                                                                                                                                                   TCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGCAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCATTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGCTATTACCCTTACAGTAGGTATTTCTGGTCTTTGGTACGTTAACTGGTTAAACATGTTATCACAGAAAATTTAGCATGATAGTTGATTGTTAGTAATTGATattcacaacaa                                                                      >  SRR13385772.705704/1‑289 (MQ=60)
                                                                                                                                                                                                                                ACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAAAAAGTAATTTGACTGC                                                      <  SRR13385772.618045/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                         TCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAAAAAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTATTCTGTACTGGGGAA                >  SRR13385772.626304/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                                     CGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATGACGTCTCGTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTGCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAAAAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC  <  SRR13385772.255137/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                     CGGGCTTGGGTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTTTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAAAAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC  <  SRR13385772.81369/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                            
GATGAAAAATTACGCCAAATAGGCAGGTTTTCAATATTAAAGAGTTAAGTATGCAAAATTTACAAAAAGTTAATGGTCAAAGTATAACTATAAAAATATAATAAAACAATAAACAATAACAACTCTCAGAATTGCAAAGCTTGACCCTTTTGCTTCTTTTCACCACCCAATTCGAAGTGCTTACATCTCTTCAAGGTTAATTGGGCTCTAGTCTTACATTTGACACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACAGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAAAAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC  >  BK006934/381865‑382441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑