Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	6054	0.0	0	0.0%	0	0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACAGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGT  >  BK006934/382089‑382667

ACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAA‑AAA‑GTAATTTGACTGC                                                                                                                                                                                                                                                                                         <  SRR13385772.618045/301‑1 (MQ=60)

                                         TCTTGTGGAAAACGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTATTCTGTACTGGGGAA                                                                                                                                                                                                                                                   >  SRR13385772.626304/1‑300 (MQ=60)

                                                     CGGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATGACGTCTCGTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTGCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC                                                                                                                                                                                                                                     <  SRR13385772.255137/301‑1 (MQ=60)

                                                     CGGGCTTGGGTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTTTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCAC                                                                                                                                                                                                                                     <  SRR13385772.81369/301‑1 (MQ=60)

                                                         GTTGGTTTGGCCACCGGAACCAGTATGTTTACGGTCATAACGGCTCTTACCTGTAGCGGACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGGGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAAT                                                                                                                                                                                                                                 <  SRR13385772.682448/301‑1 (MQ=60)

                                                               TTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTAACAAATATATA                                                                                                                                                                                                                            >  SRR13385772.1169384/1‑300 (MQ=60)

                                                                    CACCGAAACCAGATTGGTTACGGTCATATCGTTGCTTACCTTGAGCGGACAAGGAAGGCTTACCAGCTTTGTATTGAGTAACCTTGTGGTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGTTTTTTGTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCTCAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATGAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGT                                                                                                                                                                                                                      <  SRR13385772.1071505/301‑1 (MQ=60)

                                                                      CCGAAACCAGTTTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCGTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTCAATTCACAAATATCTAATGAGTAT                                                                                                                                                                                                                    <  SRR13385772.1270394/301‑1 (MQ=60)

                                                                           gaatcgtaaggcaaatccatgtcaagcaagaatttaatagttattaaacttcattctacttttgagctagctagatattttcatcatttctcaaagtactgaacacctgaaggatacttttattggcccttataataagaactCTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATGTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTA                                                                                                                                                                                                               <  SRR13385772.884881/158‑1 (MQ=60)

                                                                                   GTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATAT                                                                                                                                                                                                        <  SRR13385772.948733/300‑1 (MQ=60)

                                                                                    TGTACGGTCATAACGTCGCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATC                                                                                                                                                                                                       <  SRR13385772.666279/300‑1 (MQ=60)

                                                                                                    CTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGCTTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCAAAATTCACAAATATCTAATGAGTATTACTAATGATAACCTCAATATATTTTCTA                                                                                                                                                                                       >  SRR13385772.915184/1‑300 (MQ=60)

                                                                                                               gacgaatAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGATTGTGCTTACGACAGGTCTTACCCTTACAGTAAGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTT                                                                                                                                                                           <  SRR13385772.460530/294‑1 (MQ=60)

                                                                                                                  GAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAA‑AAACGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTAACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACAAGAGTTCTTATT                                                                                                                                                                        >  SRR13385772.1134735/1‑301 (MQ=60)

                                                                                                                                      CTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTAT                                                                                                                                                    >  SRR13385772.948994/1‑301 (MQ=60)

                                                                                                                                            ATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCCAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATTTCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTC                                                                                                                                               >  SRR13385772.965462/1‑300 (MQ=60)

                                                                                                                                                        TGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACGGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTAC                                                                                                                                  >  SRR13385772.1045346/1‑301 (MQ=60)

                                                                                                                                                          TGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTACTTCGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCACTAAAAGTATCCTTCAGGTGTTCAGTACTT                                                                                                                                >  SRR13385772.13251/1‑301 (MQ=60)

                                                                                                                                                                   GGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATG                                                                                                                       <  SRR13385772.909732/301‑1 (MQ=60)

                                                                                                                                                                    GCTTACGACAGGTCGTACCCTTACATTAGGTCTTTCTGGTCTTTGGGACGTTAACTGTTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTAAGTAATTGATCTT‑‑AAAAAA‑AAA‑GTAATTTGTCTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGA                                                                                                                      <  SRR13385772.636716/300‑1 (MQ=60)

                                                                                                                                                                              GGTCTTAACCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATGTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATT                                                                                                            <  SRR13385772.322762/301‑1 (MQ=60)

                                                                                                                                                                                         TACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCT                                                                                                   <  SRR13385772.17681/299‑1 (MQ=60)

                                                                                                                                                                                         TACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCC                                                                                                                                                                                                      <  SRR13385772.1168960/200‑1 (MQ=60)

                                                                                                                                                                                                                                                       AGCATTATAGTTGATTGTTAGTAATTGATCTTA‑AAAAAA‑AAA‑TTAATTTGACTGCACAGGTAATTAGTTGTATCTTTTTTCTGTAATGGTGAAACGGCTAAATTCACAAATATCTAATTAGTATTACTAATGATATCCTCAATATAGTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTATCTAGCTCAAAAGTAGAATGAAGTTTAATAACTAGTAAATTCTTGCTTGACATGGATTTGCCTTACTATT                                    <  SRR13385772.700773/300‑1 (MQ=60)

                                                                                                                                                                                                                                                        GCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAACAAA‑GTCATTTGACTGCTCATGTAATTAGCAGTATCTTTTTTCTGTAATGGGGTGACGGCTACTTTTACACATATCTAATGTGTTTAACTAATGATATCCTCAATATATTTTCTAACGAGAGTTCTTATTATAAGGGCCAATAAATGTATCCTTCAGGTGTTCAGTACTTTGAGAACAGATGAATATATTTCGCTAGCTCATCAGTAGAATGAAGTTTACTAACTATTAAATTCTTGCTTGACATGGAATTGCCTTACGATTC                                   >  SRR13385772.761577/1‑300 (MQ=60)

                                                                                                                                                                                                                                                                         TAGTAATTGATCTTA‑AAAAAA‑AAA‑GTAATTGGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTGGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGTCATGGATTTGCCGTACGATTCAGGATATTTTAAAAttt                  <  SRR13385772.1285396/300‑4 (MQ=60)

                                                                                                                                                                                                                                                                                      A‑‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGT  <  SRR13385772.913690/300‑1 (MQ=60)

ACATTCCAATCTCAAAACAACCTTCTTGGTAGTCTTAGCTTTCTTGTGGAAAACAGGCTTGGTTTGACCACCGAAACCAGATTGTTTACGGTCATAACGTCTCTTACCTTGAGCGAACAAGGAAGCCTTACCAGCTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑‑AAAAAA‑AAA‑GTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGT  >  BK006934/382089‑382667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`