Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑CCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAA  >  BK006934/382223‑382776
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                  
CTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTAT                                                                                                                                                                                                                                                                  >  SRR13385772.948994/1‑301 (MQ=60)
      ATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCCAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATTTCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTC                                                                                                                                                                                                                                                             >  SRR13385772.965462/1‑300 (MQ=60)
                  TGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACGGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTAC                                                                                                                                                                                                                                                >  SRR13385772.1045346/1‑301 (MQ=60)
                    TGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTACTTCGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCACTAAAAGTATCCTTCAGGTGTTCAGTACTT                                                                                                                                                                                                                                              >  SRR13385772.13251/1‑301 (MQ=60)
                             GGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATG                                                                                                                                                                                                                                     <  SRR13385772.909732/301‑1 (MQ=60)
                              GCTTACGACAGGTCGTACCCTTACATTAGGTCTTTCTGGTCTTTGGGACGTTAACTGTTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTAAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGTCTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGA                                                                                                                                                                                                                                    <  SRR13385772.636716/300‑1 (MQ=60)
                                        GGTCTTAACCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATGTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATT                                                                                                                                                                                                                          <  SRR13385772.322762/301‑1 (MQ=60)
                                                   TACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCT                                                                                                                                                                                                                 <  SRR13385772.17681/299‑1 (MQ=60)
                                                                                                                 AGCATTATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAATTAATTTGACTGCACAGGTAATTAGTTGTATCTTTTTTCTGTAATGGTGAAACGGCTAAATTCACAAATATCTAATTAGTATTACTAATGATATCCTCAATATAGTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTATCTAGCTCAAAAGTAGAATGAAGTTTAATAACTAGTAAATTCTTGCTTGACATGGATTTGCCTTACTATT                                                                                                                                                  <  SRR13385772.700773/300‑1 (MQ=60)
                                                                                                                  GCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAACAAAGTCATTTGACTGCTCATGTAATTAGCAGTATCTTTTTTCTGTAATGGGGTGACGGCTACTTTTACACATATCTAATGTGTTTAACTAATGATATCCTCAATATATTTTCTAACGAGAGTTCTTATTATAAGGGCCAATAAATGTATCCTTCAGGTGTTCAGTACTTTGAGAACAGATGAATATATTTCGCTAGCTCATCAGTAGAATGAAGTTTACTAACTATTAAATTCTTGCTTGACATGGAATTGCCTTACGATTC                                                                                                                                                 >  SRR13385772.761577/1‑300 (MQ=60)
                                                                                                                                   TAGTAATTGATCTTAAAAAAA‑AAAGTAATTGGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTGGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGTCATGGATTTGCCGTACGATTCAGGATATTTTAAAAttt                                                                                                                                <  SRR13385772.1285396/300‑4 (MQ=60)
                                                                                                                                                A‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGT                                                                                                                <  SRR13385772.913690/300‑1 (MQ=60)
                                                                                                                                                                       GCACATGTAATTAGTTGTATCTTTTTTAACTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACAC                                                                                          >  SRR13385772.994842/1‑301 (MQ=60)
                                                                                                                                                                                 TTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCC                                                                                >  SRR13385772.441284/1‑301 (MQ=60)
                                                                                                                                                                                             TTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAGAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATA                                                                     <  SRR13385772.570854/300‑1 (MQ=60)
                                                                                                                                                                                             TTTGTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAG                                                                        <  SRR13385772.795379/297‑1 (MQ=60)
                                                                                                                                                                                                                                               ACGAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACGTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGATTTAAGTTTAATAACTATTGAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCGCACGCCCTAATGGAGATAAATAACATGTTTTTTCTATTCCCTAATCGGCCACATACCCATTATTACTG                   <  SRR13385772.1022342/300‑1 (MQ=60)
                                                                                                                                                                                                                                                               ATATATTTTCTAACCAGAGTTCTTATTATAATGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAA  <  SRR13385772.1051535/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                          AACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATCTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTC                                                                                                                                                 >  SRR13385772.884881/1‑149 (MQ=60)
                                                                                                                                                                                                                                                                                        TTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCCCTAATCGTCCA                                    >  SRR13385772.384234/1‑242 (MQ=60)
                                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                  
CTTTGTATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑CCTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAA  >  BK006934/382223‑382776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑