Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑C‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATT  >  BK006934/382229‑382820
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                           
ATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCCAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATTTCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTC                                                                                                                                                                                                                                                                                                          >  SRR13385772.965462/1‑300 (MQ=60)
            TGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACGGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTAC                                                                                                                                                                                                                                                                                             >  SRR13385772.1045346/1‑301 (MQ=60)
              TGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTACTTCGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCACTAAAAGTATCCTTCAGGTGTTCAGTACTT                                                                                                                                                                                                                                                                                           >  SRR13385772.13251/1‑301 (MQ=60)
                       GGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATG                                                                                                                                                                                                                                                                                  <  SRR13385772.909732/301‑1 (MQ=60)
                        GCTTACGACAGGTCGTACCCTTACATTAGGTCTTTCTGGTCTTTGGGACGTTAACTGTTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTAAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGTCTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGA                                                                                                                                                                                                                                                                                 <  SRR13385772.636716/300‑1 (MQ=60)
                                  GGTCTTAACCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATGTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATT                                                                                                                                                                                                                                                                       <  SRR13385772.322762/301‑1 (MQ=60)
                                             TACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCT                                                                                                                                                                                                                                                              <  SRR13385772.17681/299‑1 (MQ=60)
                                                                                                           AGCATTATAGTTGATTGTTAGTAATTGATCTTAAAAAAA‑AAATTAATTTGACTGCACAGGTAATTAGTTGTATCTTTTTTCTGTAATGGTGAAACGGCTAAATTCACAAATATCTAATTAGTATTACTAATGATATCCTCAATATAGTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTATCTAGCTCAAAAGTAGAATGAAGTTTAATAACTAGTAAATTCTTGCTTGACATGGATTTGCCTTACTATT                                                                                                                                                                                               <  SRR13385772.700773/300‑1 (MQ=60)
                                                                                                            GCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAACAAAGTCATTTGACTGCTCATGTAATTAGCAGTATCTTTTTTCTGTAATGGGGTGACGGCTACTTTTACACATATCTAATGTGTTTAACTAATGATATCCTCAATATATTTTCTAACGAGAGTTCTTATTATAAGGGCCAATAAATGTATCCTTCAGGTGTTCAGTACTTTGAGAACAGATGAATATATTTCGCTAGCTCATCAGTAGAATGAAGTTTACTAACTATTAAATTCTTGCTTGACATGGAATTGCCTTACGATTC                                                                                                                                                                                              >  SRR13385772.761577/1‑300 (MQ=60)
                                                                                                                             TAGTAATTGATCTTAAAAAAA‑AAAGTAATTGGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTGGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGTCATGGATTTGCCGTACGATTCAGGATATTTTAAAAttt                                                                                                                                                                             <  SRR13385772.1285396/300‑4 (MQ=60)
                                                                                                                                          A‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGT                                                                                                                                                             <  SRR13385772.913690/300‑1 (MQ=60)
                                                                                                                                                                 GCACATGTAATTAGTTGTATCTTTTTTAACTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACAC                                                                                                                                       >  SRR13385772.994842/1‑301 (MQ=60)
                                                                                                                                                                           TTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCC                                                                                                                             >  SRR13385772.441284/1‑301 (MQ=60)
                                                                                                                                                                                       TTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAGAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATA                                                                                                                  <  SRR13385772.570854/300‑1 (MQ=60)
                                                                                                                                                                                       TTTGTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAG                                                                                                                     <  SRR13385772.795379/297‑1 (MQ=60)
                                                                                                                                                                                                                                         ACGAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACGTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGATTTAAGTTTAATAACTATTGAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCGCACGCCCTAATGGAGATAAATAACATGTTTTTTCTATTCC‑CTAATCGGCCACATACCCATTATTACTG                                                               <  SRR13385772.1022342/300‑1 (MQ=60)
                                                                                                                                                                                                                                                         ATATATTTTCTAACCAGAGTTCTTATTATAATGGCCAATAAAAGTATCCTTCAGTTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAA                                              <  SRR13385772.1051535/301‑1 (MQ=60)
                                                                                                                                                                                                                                                                    AACCAGAGTTCTTATTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATCTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTC                                                                                                                                                                                              >  SRR13385772.884881/1‑149 (MQ=60)
                                                                                                                                                                                                                                                                                  TTATAAGGGCCAATAAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCA                                                                                >  SRR13385772.384234/1‑242 (MQ=60)
                                                                                                                                                                                                                                                                                                AAAAGTATCCTTCAGGTGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGATATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATTCC‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATA        <  SRR13385772.542820/300‑1 (MQ=60)
                                                                                                                                                                                                                                                                                                     TATCCTTCAGGAGTTCAGTACTTTGAGAAATGATGAAAATATTTAGCTAGCTCAAAAGTAGAATGAAGTTTAATAACTATTAAATTCTTGCTTGACATGGATTTGCCTTACGATTCAGGCTATTTTAAAA‑‑TTTCTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGCTAAATACCATGGATTGTCTATT‑CACTCATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATCTACGTTAAAACAGTGAAAATACCATATCAATT  >  SRR13385772.1277088/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                           
ATTGAGTAACCTTGTGTTGAGTGTGCTTACGACAGGTCTTACCCTTACAGTAGGTCTTTCTGGTCTTTGGGACGTTAACTGGTTCAAAATGATATCACAGCAAATTTAGCATGATAGTTGATTGTTAGTAATTGATCTT‑AAAAAA‑AAAGTAATTTGACTGCACATGTAATTAGTTGTATCTTTTTTCTGTAATGGGGAAACGGCTAAATTCACAAATATCTAATGAGTATTACTAATGATATCCTCAATATATTTTCTAACCAGAGTTCTTATTAAAAGGGCCAATAAAAGTATCATTCAGGTGTTCAGTACTTTAGGAAATGATGAAAATATTTAACTAGCTCAAAAGTA‑AATGAAGTTTAATAACTATTAGTTTCTTGCTTGACATGGATTTGCCCTACGATTCAGGATATTTTAAAAAGTTCTTTAGCATTCTAGTAGTACCTGTGTACTAATTACACTCTCACGCCCTAATGGAGATAAATAACATGGTTTGTCTATT‑C‑CTAATCGTCCACATACCCATTATTACTGATTGTTTTTTTGCTTAATCTCCTTCAATTTACGTTAAAACAGTGAAAATACCACATCAATT  >  BK006934/382229‑382820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑