Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGTCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCCATGAGAGGGTTCTACGAAAAGCATCATCTTATTTTCGC  >  BK006934/384322‑384846
                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        
AAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGAGTACACTTTGAC                                                                                                                                                                                                                                  <  SRR13385772.353171/301‑1 (MQ=60)
                            CTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTCTTAACGGCTTGTGAACACATTGACAGTCAATCAGCGTAGTGACTTCTTTTAT                                                                                                                                                                                                      >  SRR13385772.479224/1‑301 (MQ=60)
                                                    GTTCACATTAATGATGGTTTACAAGACTTGGGCTATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGCAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTCTACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAATAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATAAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATA                                                                                                                                                                               >  SRR13385772.928467/1‑300 (MQ=60)
                                                          ATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCAT                                                                                                                                                                                <  SRR13385772.220482/293‑1 (MQ=60)
                                                             AATGATGGTTTACAAGACGTGGGATAGGACTACCGGCGACGGCTTGGAATTTGGTGTAGGTGTTAGCAAGGACGGTGACGTGGTGTATGTTAATGGATTTATGTGAAATGCGTCTTTTGTTTATTACCATATATAGAAAATAGGTGTATACTAGTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGT                                                                                                                                                                     <  SRR13385772.1084073/301‑1 (MQ=60)
                                                                                                     GACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATT                                                                                                                             >  SRR13385772.651374/1‑301 (MQ=60)
                                                                                                          GGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCT                                                                                                                        >  SRR13385772.1122155/1‑301 (MQ=60)
                                                                                                                           TTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTCTGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACAATTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTACGTAAGATGCCAAATTATCCTTCTTTAGCCAATTGAA                                                                                                        >  SRR13385772.828544/1‑300 (MQ=60)
                                                                                                                               CAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACA                                                                                                    >  SRR13385772.232438/1‑300 (MQ=60)
                                                                                                                                      GGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTT                                                                                                                                                 <  SRR13385772.114656/248‑1 (MQ=60)
                                                                                                                                               GTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTCAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGAGACTTCTTTTATCAGCGGAAACAACCATATACATAAAAGAAACGTGATGGTCGTTCCAGTAGTTTATTAAGTAAGATGAAAAATTATCCTTCTTTAGCCAATTGAAAACAAAACATCTTAATCTGTT                                                                                   >  SRR13385772.548549/1‑301 (MQ=60)
                                                                                                                                                      ATAATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTGAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTGTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAAT                                                                             <  SRR13385772.269801/300‑1 (MQ=60)
                                                                                                                                                        AATGGATTTATGTGAAATGCTTCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGCTGGTCGTTCCCGTAGGTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTT                                                                          >  SRR13385772.619356/1‑301 (MQ=60)
                                                                                                                                                                             TCTTTTTTTTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACAAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTATGTACACTTTGACAGTCAATCCGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAAAGTGATGGACGTTACCGTAGTTTATTAAGTAAGATGACAAATTATCCTTATTTAGCCAATTGAACACAAAACTTCTTAATATGTTTCAAATGTTTTACAGTCGCTCATATGTTA                                                      >  SRR13385772.1080299/1‑300 (MQ=60)
                                                                                                                                                                                          ACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCC                                        <  SRR13385772.1237947/301‑1 (MQ=60)
                                                                                                                                                                                          ACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTC                                         <  SRR13385772.1056763/300‑1 (MQ=60)
                                                                                                                                                                                            CATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGACACAACCATATCCATAAAAGCAAAGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAAATATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGAATACTTTTCCAT                                      >  SRR13385772.234607/1‑301 (MQ=60)
                                                                                                                                                                                                 ATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAATCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGTCTTTTGTACACGTTGACAGTCAATCAGCGTAGTGACGTCTTTTATCATCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCCATGAGAG                                 <  SRR13385772.677099/301‑1 (MQ=60)
                                                                                                                                                                                                 ATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCCATGAGA                                  <  SRR13385772.160748/300‑1 (MQ=60)
                                                                                                                                                                                                                  ACGATTAGGTTAATGTAGTAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTGCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCGTAGAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGGAAGATGACAAATTATCCTTCTTTAGCCAATTGATAACAAAACTTCTTAATCTGTTTCCAATGTTTTAACGTCGCTCATATGTTCATGACGACTTTTCCATGAGAGGGTGCTATGAAAAGCAT                <  SRR13385772.341039/301‑1 (MQ=60)
                                                                                                                                                                                                                          TTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTATCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAATTCGCTCATATGTTCATGACTACTTTTCCATGAGAGGGTTCTATGAAAAGCATCATCTTAT        >  SRR13385772.137323/1‑301 (MQ=60)
                                                                                                                                                                                                                              ATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTACTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCCCATATGTTCATGACTACTTTTCCATGAGAGGGTTCTATGAAAAGCATCATCTTATTTTC    >  SRR13385772.128425/1‑301 (MQ=60)
                                                                                                                                                                                                                                 TAATAAGCAGGACTATGACAAACCAAAGAGTGAAACTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGCCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCCATGAGAGGGTTCTATGAAAAGCATCATCTTATTTTCGC  >  SRR13385772.628398/1‑300 (MQ=60)
                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                        
AAGGGTTCAAGCACTACTTAGATGGCCTCTTTTTTGGAAGCATCTGTAATGTGTTCACATTAATGATGGTTTACAAGACTTGGGATATGACTACCGACGACGACTTGGAATTTGGTGTAAGTGTTAGCAAGGACGGTGACGTGGTGTATGATAATGGATTTATGTGAAATGCTTCTTTTTTCTATTACCATATATAGAAAATAGGTGTATACTATTAGTTTAATGTAATAAGCAGGACTATGACAAACCAAAGAGTGAAAGTAGCCGTTTCCACGTTTTAACGGCTTGTGTACACTTTGACAGTCAATCAGCGTAGTGACTTCTTTTATCAGCGGAAACAACCATATCCATAAAAGAAACGTGATGGTCGTTCCCGTAGTTTATTAAGTAAGATGACAAATTATCCTTCTTTAGTCAATTGAAAACAAAACTTCTTAATCTGTTTCCAATGTTTTAAAGTCGCTCATATGTTCATGACTACTTTTCCATGAGAGGGTTCTACGAAAAGCATCATCTTATTTTCGC  >  BK006934/384322‑384846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑