Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTCATCACAGGATCTTGTAACAGTTTCACGTCTGTGTTTATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTT  >  BK006939/337000‑337533
                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                            
TTCATCACAGGATCTTGTAACAGTTTCACGTCTGTGTTTATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCCAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCACAACGCGGTCAACGAGTCAGCACCGGAGTTGC                                                                                                                                                                                                                                           >  SRR13385772.892025/1‑301 (MQ=60)
TTCATCACAGGATCTTGTAACAGTTTCACGTCTGTGTTTATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGC                                                                                                                                                                                                                                           >  SRR13385772.704469/1‑301 (MQ=60)
TTCATCACAGGATCTTGTAACAGTTTCACGTCTGTGTTTATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGT                                                                                                                                                                                                                                              <  SRR13385772.389478/298‑1 (MQ=60)
                                       ATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCA                                                                                                                                                                                                    <  SRR13385772.1089985/301‑1 (MQ=60)
                                                                                             TCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGATCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTATTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCACAATCC                                                                                                                                              >  SRR13385772.839083/1‑301 (MQ=60)
                                                                                                 GCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGG                                                                                                                                          <  SRR13385772.1031737/301‑1 (MQ=60)
                                                                                                             CTATTTGATTACCACAGGATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCGCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGATTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGTTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTAT                                                                                                                                  <  SRR13385772.985388/297‑1 (MQ=60)
                                                                                                                                            AGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTAT                                                                                               <  SRR13385772.758014/301‑1 (MQ=60)
                                                                                                                                                        ACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG                                                                                   >  SRR13385772.542560/1‑301 (MQ=60)
                                                                                                                                                                     CCGTAAAAGTGAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACTCAGTCCAAACGCGGTCAACTAGTCAGCACCGGGGTGGCTTTCTTTATCTATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATATTTATAATTAATCAA‑GGAAAAAAAAAAGAG                                                                     <  SRR13385772.407866/301‑1 (MQ=60)
                                                                                                                                                                                     GGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGCATAGTTATAATTAATCAATG‑AAAAAAAAACGAGAAAGTAAAAAATGTT                                                      >  SRR13385772.313102/1‑300 (MQ=60)
                                                                                                                                                                                                           AACATGAGGCTCTAGAATGTGTTAATCCTCCATTGACATCCGCCACCCTTTCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGTACCTGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTTTCCCATTTTTCTTTTTCTGTTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATT                               <  SRR13385772.1112180/301‑1 (MQ=60)
                                                                                                                                                                                                              ATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAAAAAGTAAAAAATGTTAACACAACTAATATAAACTAATcttc                            >  SRR13385772.320515/1‑297 (MQ=60)
                                                                                                                                                                                                                             GTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAACCGCGGTCAACGAGTCAGCACCGGAGTGGCTGTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAAC              <  SRR13385772.789458/300‑1 (MQ=60)
                                                                                                                                                                                                                                       TCAATTGACATCCGCCACCATTGCATTGCACAAAGTCCAAACGCGGTCAACGAGTAAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCACATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATACTTATAATTAATCAATG‑AAACAAAAAAGAAAACTTACAAAATGTTAAAACAACTAATATACACTAATTTTCATTGATAAAAGAAAATGTTGTAATT   >  SRR13385772.956767/1‑301 (MQ=60)
                                                                                                                                                                                                                                        CCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTATAACAACTAATATACACTATTTTTCTTTGATAACAGATCTTATTGTAGTTT  >  SRR13385772.406904/1‑301 (MQ=60)
                                                                                                                                                                                                                                                           TTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTA                                                                                                                 >  SRR13385772.1280977/1‑172 (MQ=60)
                                                                                                                                                                                                                                                                 TGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATA                                                                                                    >  SRR13385772.1034836/1‑179 (MQ=60)
                                                                                                                                                                                                                                                                 TGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATA                                                                                                    >  SRR13385772.1024685/1‑179 (MQ=60)
                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                            
TTCATCACAGGATCTTGTAACAGTTTCACGTCTGTGTTTATGAAAGTATCAATCAAAGCCCTTGGTAAATTTCCTTCATGGAACGATTTCTGCTCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTT  >  BK006939/337000‑337533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑