Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 6054 0.0 0 0.0% 0 0.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTT  >  BK006939/337093‑337661
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
TCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGATCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTATTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCACAATCC                                                                                                                                                                                                                                                                              >  SRR13385772.839083/1‑301 (MQ=60)
    GCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGG                                                                                                                                                                                                                                                                          <  SRR13385772.1031737/301‑1 (MQ=60)
                CTATTTGATTACCACAGGATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCGCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGATTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGTTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTAT                                                                                                                                                                                                                                                                  <  SRR13385772.985388/297‑1 (MQ=60)
                                               AGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTAT                                                                                                                                                                                                                               <  SRR13385772.758014/301‑1 (MQ=60)
                                                           ACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG                                                                                                                                                                                                                   >  SRR13385772.542560/1‑301 (MQ=60)
                                                                        CCGTAAAAGTGAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACTCAGTCCAAACGCGGTCAACTAGTCAGCACCGGGGTGGCTTTCTTTATCTATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATATTTATAATTAATCAA‑GGAAAAAAAAAAGAG                                                                                                                                                                                                     <  SRR13385772.407866/301‑1 (MQ=60)
                                                                                        GGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGCATAGTTATAATTAATCAATG‑AAAAAAAAACGAGAAAGTAAAAAATGTT                                                                                                                                                                                      >  SRR13385772.313102/1‑300 (MQ=60)
                                                                                                              AACATGAGGCTCTAGAATGTGTTAATCCTCCATTGACATCCGCCACCCTTTCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGTACCTGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTTTCCCATTTTTCTTTTTCTGTTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATT                                                                                                                                                               <  SRR13385772.1112180/301‑1 (MQ=60)
                                                                                                                 ATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAAAAAGTAAAAAATGTTAACACAACTAATATAAACTAATcttc                                                                                                                                                            >  SRR13385772.320515/1‑297 (MQ=60)
                                                                                                                                GTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAACCGCGGTCAACGAGTCAGCACCGGAGTGGCTGTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAAC                                                                                                                                              <  SRR13385772.789458/300‑1 (MQ=60)
                                                                                                                                          TCAATTGACATCCGCCACCATTGCATTGCACAAAGTCCAAACGCGGTCAACGAGTAAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCACATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATACTTATAATTAATCAATG‑AAACAAAAAAGAAAACTTACAAAATGTTAAAACAACTAATATACACTAATTTTCATTGATAAAAGAAAATGTTGTAATT                                                                                                                                   >  SRR13385772.956767/1‑301 (MQ=60)
                                                                                                                                           CCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTATAACAACTAATATACACTATTTTTCTTTGATAACAGATCTTATTGTAGTTT                                                                                                                                  >  SRR13385772.406904/1‑301 (MQ=60)
                                                                                                                                                              TTGCATTGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTA                                                                                                                                                                                                                                                 >  SRR13385772.1280977/1‑172 (MQ=60)
                                                                                                                                                                    TGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATA                                                                                                                                                                                                                                    >  SRR13385772.1024685/1‑179 (MQ=60)
                                                                                                                                                                    TGCACACAGTCCAAACGCGGTCAACGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATA                                                                                                                                                                                                                                    >  SRR13385772.1034836/1‑179 (MQ=60)
                                                                                                                                                                                                 CAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAAC                                                                             <  SRR13385772.275465/300‑1 (MQ=60)
                                                                                                                                                                                                             GGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGATACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGATGTAGTTTTATTCCGTTGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGCAGTATATAT                                                                 >  SRR13385772.1173814/1‑300 (MQ=60)
                                                                                                                                                                                                                                         TAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATT                                    >  SRR13385772.615613/1‑301 (MQ=60)
                                                                                                                                                                                                                                                GGTCCCATTTTGCTTTTTCGAGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTGGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCT                              <  SRR13385772.406633/300‑1 (MQ=60)
                                                                                                                                                                                                                                                       TTTTTCTTTTTCTGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATAAACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATCTACTTAGCACTATAATATCCAGTTTCAATTTACTCTGTCAGAAT                      >  SRR13385772.195667/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                   TGGTTCTCTATATGTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAACAAATGTTAAAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTCTAATATCAAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTG          >  SRR13385772.158033/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                           TATATGTTATACAACAATGGAATCGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATG‑AAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGCAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACACAACAGCAGTCTATATCCTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTATT  >  SRR13385772.586652/1‑301 (MQ=60)
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                                                        
TCTTGCAGGATCTCCACTATTTTATTACCACAGTATTCTGCTACTTTAGCGCCACCATGACCATCGAATATACCGTAAAATGCAATATGGTCCTTATCGGACTTTGTCAAAACATTAGGCTCTAGAATGTGTGAATCCTCCATTGACATCCGCCACCCTTGCATTGCACACAGTCCAAACGCGGTCAAGGAGTCAGCACCGGAGTGGCTCTCTTTATCAATTACCGGGTTTGATAGAATTTGTCCCATTTTTCTTTTTCTGGTTCTCTATATTTTATACAACAATGGAATAGTCAAAATCCTAGGGATGTTATTAATCGGAAAACTACTATCTCGAACGAATAGTTATAATTAATCAATGAAAAAAAAAAAGAGAAAGTAAAAAATGTTACAACAACTAATATACACTAATTGTCCTTGATAACAGAACTTGTTGTAGTTTTATTCCGTGGGGAGGAGGGTGAATTTTTTTTATTTAGTTTTAAAGAACAAAACAGAAGTCTATATACTTAGCACTATAATATCCAGTTTCAATTTGCTCTGTCAGAATCCGAATTGGCTGGTTTTCTT  >  BK006939/337093‑337661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑